barSeed - Barley Seed Development Database

Probe CUST_15736_PI390587928

Source Contig U35_37746

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_15736_PI390587928	Hv_44K_v2	TTTGGGCCTTTGTATATGTGGTGCTTATGTTGTTGAAGTGTTGATAGGTCATTAAATAGA	57	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.279	1.955	1.117	0.792	0.214	0.260
Raw	74.132	101.503	49.783	56.016	3.475	6.455

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK377088	2180	2e-24	2081 - 2140	100	60 / 60	plus	ABC33434
Harvest21	ABC33434	576	3e-25	58 - 117	100	60 / 60	minus	ABC33434
Harvest35	U35_37746	576	3e-25	58 - 117	100	60 / 60	minus

Contig Sequence (576 bp)

>U35_37746 576 Hv_44K_v2
TTTTTTTTTTTTTTTTTGAAAAAAACCTTCCTAGTATTTCCAAAAAAANTATTATATTCT
ATTTAATGACCTATCAACACTTCAACAACATAAGCACCACATATACAAAGGCCCAAAAAG
ACCTGGAGCACTTGCCTCAGCAACTCACCGTATCCGCATTCCTGTACCAGCCAAACGATA
GCAAAGGCAAAATCTATATTGGTCATCACAGTGATGTATCATAACCATCAAAATCTATAT
CTCACTACAGTAGACGAAACAAAGTCTTCTTGCTTTATCGCCTCGGGCCCCGGAAAAAGA
GAGCTGACATGGCCAGGGATATACCAGACTGTCAACATTCTAAGGCAAAATGTCTCTATC
ACCACCTGTACAACATCCCCTTATCCAAGAACTAAGGTGTCCTAAGGATACTAAAACCGC
AATCACAATGAAGCCAATAGCCGTCCACCGGTCAGCATCATCGTCGGTGATTCCAAATGA
CGGCACAGATGGAGTGGGTGGAGTGCCAGCAACGTTTAGTGTGAGGATGAAGATTGCATA
AATGACGAGCAGTGAGAAGGAAAGAGAGATGAATCG

Homology of Contig U35_37746 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None