barSeed - Barley Seed Development Database

Probe CUST_15727_PI390587928

Source Contig U35_13794

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_15727_PI390587928	Hv_44K_v2	TCATTTTAAGGATAGATACAAGGTCGATTTGGTCTTCTATGTCGATGAGATTGTGCAGGT	643	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK249532.1	2018	2e-24	737 - 796	100	60 / 60	plus	ABC05661
MLOC	AK361815	2139	2e-24	667 - 726	100	60 / 60	plus	ABC05661
MLOC	AK356192	1861	2e-24	552 - 611	100	60 / 60	plus	ABC05661
MLOC	MLOC_10657.1	2820	2e-24	2015 - 2074	100	60 / 60	plus	ABC05661
MLOC	MLOC_10657.4	859	2e-24	419 - 478	100	60 / 60	plus	ABC05661
MLOC	MLOC_10657.3	1011	2e-24	564 - 623	100	60 / 60	plus	ABC05661
MLOC	MLOC_10657.2	2543	2e-24	1738 - 1797	100	60 / 60	plus	ABC05661
JLOC1	JLOC1_6989.1	1621	8e-25	827 - 886	100	60 / 60	plus
Harvest21	ABC05661	1859	3e-25	559 - 618	100	60 / 60	plus	ABC05661
Harvest21	ABC05660	703	3e-25	644 - 703	100	60 / 60	plus
Harvest35	U35_13811	1859	3e-25	559 - 618	100	60 / 60	plus
Harvest35	U35_13794	703	3e-25	644 - 703	100	60 / 60	plus

Contig Sequence (703 bp)

>U35_13794 703 Hv_44K_v2
CCGGATTTCCCCAACGACGACCTCCCATGGAGAGCGAGCTGCGGCGGAAGCTAGTTTAGC
TCAGCCGCCGACCCAACCTCACCGCGGCCCGCTGCCGAGCTGAGGACCCCAACCCGCAGA
TCTGGTGGAGATCGTAGCCAAAGCTGCCGCGAGCCAACCTCTCTCTGCTCCTCACGACTC
TTCCTCCAGCGTCGGCACAGGCAGAAGGCGCGACGGCATGCCGCGCCCGTGGCTGAGCCC
GCCCGGACGTGTGTGTTGTTTTTTATTCTGAAGTAAGAGAAGGGATGACAAGGGTATTGA
GGTCTCCAGCAATGGCAACCTCCTCTCTTGCTCCGCCTGAGGTGCCCATGGAGCTGCACA
CAGGCAACCGTGACCGCCTGATAACCGCGCTTCGCGCCCACCTCTCCGCCACCGCCAGCC
CTCCCCGTGGCCTCGCTCTCCTCCAGGGTGGCGAGGAGCAGACACGACATTGCACTGATC
ATCTTGAGCTATTTAGGCAGGAGAGCTACTTTGCTTATCTTTTTGGAGTGCGCGAGCCAG
GGTTCTACGGCGCTATAGACATCGCCTCTGGACAGTCCATTTTGTTTGCTCCAAGGTTGC
CACCTGACTATGCTGTCTGGATGGGTGAAATAAAACCACTGTCTCATTTTAAGGATAGAT
ACAAGGTCGATTTGGTCTTCTATGTCGATGAGATTGTGCAGGT

Homology of Contig U35_13794 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g13140.1	507	2e-73	protein\|xaa-Pro dipeptidase, putative, expressed
Brachypodium v1_2	Bradi3g08420.1	503	2e-73
Arabidopsis v10	AT4G29490.1	486	7e-59	Metallopeptidase M24 family protein \| chr4:14487943-14491321 FORWARD LENGTH=486