barSeed - Barley Seed Development Database

Probe CUST_15723_PI390587928

Source Contig U35_13796

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_15723_PI390587928	Hv_44K_v2	TCCCATGACTATGGTGGCTTTGTGTTCTTAATATGGATGTTCTTATCCTGTGATAAAAAA	761	GeneList: mediumpurple3 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	4.848	4.591	1.488	0.566	0.305	0.172
Raw	1622.913	2340.882	657.616	401.477	77.724	48.141

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest35	U35_13796	832	3e-25	762 - 821	100	60 / 60	plus

Contig Sequence (832 bp)

>U35_13796 832 Hv_44K_v2
ACCCCCGAGGAAAAAGAATCCTCCGCAGCTCAGGCGATCGATCTTTAGCGCTTGGCGAAC
CTCCTTCTCCGTCAAGATGCAGATCTTTGTGAAGACACTCACCGGCAAGACCATCACCCT
CGAGGTTGAGTCTTCTGACACGATCGACAATGTCAAGGCGAAGATCCAGGATAAGGAGGG
TATCCCGCCGGACCAGCAGCGATTGATCTTTGCCGGCAAGCAGCTTGAGGATGGGCGCAC
CCTAGCTGATTACAACATCCAGAAAGAGTCTACCCTCCACCTGGTGCTCCGCCTCCGTTG
TGGAATGCAAATCTTCGTCAAGACCCTTACTGGCAAGACCATCACCCTGGAGGTGGAATC
TTCGGACACCATTGACAACGTGAAGGCTAAGATCCAGGACAAGGAGGGCATCCCCCCGGA
CCAGCAGCGCCTGATCTTTGCAGGTAAGCAGCTTGAGGATGGTCGCACTCTTGCAGATTA
CAACATTCAGAAGGAGTCTACTCTCCACTTGGTGCTCCGCCTTCGTGGAGGCCAGTAATT
TCCTTGCATCCTTGGAAGTTTGTTCGCAAGTCTGTTGCGCCTGGTGGCCTCTTCCATTGT
CTCTTGGTTTACTATGTGCAAGTCTGAGTCACGTGTCTGTTGCTGAAACTCTTTAGTCAT
GTGCCGTTTGCTAGTACATCTGTCGGTGCCTTATGGCAGTGTTATCTCTGTTATGAGTCA
AGTGCAATTTGAATATTTCATAATGTTCCTGATAACACTTATCCCATGACTATGGTGGCT
TTGTGTTCTTAATATGGATGTTCTTATCCTGTGATAAAAAAAAAAAAAAAAA

Homology of Contig U35_13796 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g53620.4	230	2e-98	protein\|ubiquitin family protein, putative, expressed
Brachypodium v1_2	Bradi3g04730.2	230	1e-99
Arabidopsis v10	AT4G05050.1	229	7e-99	\| Symbols: UBQ11 \| ubiquitin 11 \| chr4:2588271-2588960 REVERSE LENGTH=229