barSeed - Barley Seed Development Database

Probe CUST_15720_PI390587928

Source Contig U35_49726

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_15720_PI390587928	Hv_44K_v2	TGAGAACGACACCGTCTAGTTGCTTTTATCTTAGTGTCGTCGTTGGATGGTTTTGGCACG	424	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.563	1.254	1.142	0.687	0.328	0.239
Raw	104163.200	124320.166	103963.966	96468.933	16420.233	13275.997

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC51599	484	3e-25	425 - 484	100	60 / 60	plus
Harvest35	U35_49726	484	3e-25	425 - 484	100	60 / 60	plus

Contig Sequence (484 bp)

>U35_49726 484 Hv_44K_v2
TCAAGGAGAAGTTCGAGGGGCTGTGCAAGGTCATCAAGGAGGTGCTGGGCGACAAGGTGG
AGAAGGTCATCGTCTCTGACCGTGTTGTGGACTCACCGTGCTGTCTGGTGACTGGTGAGT
ATGGGTGGACCGCCAACATGGAGAGGATCATGAAGGCCCAGGCCTTGAGGGACTCGAGCA
TGGCTGGCTACATGTCTAGCAAGAAGACCATGGAGATCAACCCTGAGAACGCCATCATGG
ACGAGCTCCGCAAGCGTGCCGACGCCGACAAGAACGACAAGTCGGTGAAGGACCTGGTGA
TGCTTCTCTTCGAGACCTCCCTGCTCACCTCGGGCTTCAGCCTTGAGGACCCCAACACCT
TCGGCACCAGGATCCACCGCATGCTCAAGCTTGGCCTGAGCATTGATGAGGACGATGAGG
CGCCTGAGAACGACACCGTCTAGTTGCTTTTATCTTAGTGTCGTCGTTGGATGGTTTTGG
CACG

Homology of Contig U35_49726 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g30412.1	700	9e-87	protein\|heat shock protein, putative, expressed
Brachypodium v1_2	Bradi3g39590.1	701	5e-88
Arabidopsis v10	AT5G56030.2	728	3e-84	\| Symbols: HSP81-2 \| heat shock protein 81-2 \| chr5:22686923-22689433 FORWARD LENGTH=728