barSeed - Barley Seed Development Database

Probe CUST_15719_PI390587928

Source Contig U35_13798

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_15719_PI390587928	Hv_44K_v2	CTAAATAGTCGTCTAGGTTCATAAAAATTGGAGTCTAGTTTTGTCCTGTTGGATATACAG	559	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.735	3.491	0.766	0.569	0.942	0.839
Raw	21.465	39.151	6.779	7.314	3.279	3.306

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_22062.1	546	7e-23	255 - 314	98	59 / 60	minus	None
Harvest21	ABC01090	619	3e-25	560 - 619	100	60 / 60	plus
Harvest35	U35_13798	619	3e-25	560 - 619	100	60 / 60	plus

Contig Sequence (619 bp)

>U35_13798 619 Hv_44K_v2
CCCGGCGAGAGGAGAGCGAGAGCCATCGACGTGCGCCAAGATGCAGATCTTCGTGAAGAC
GCTGACGGGGAAGACCATCACGCTCGAGGTGGAGTCCTCAGACACCATCGACAACGTCAA
GGCCAAGATACAGGACAAGGAAGGTATCCCGCCGGACCAGCAGCGCCTCATCTTCGCCGG
GAAGCAGCTAGAGGATGGCCGCACTCTGGCCGACTACAACATCCAAAAGGAGTCGACGCT
TCACCTGGTGCTGCGCCTCCGCGGCGGCAGCAGAGGTCAATACCCCAAGAACCTCGAACC
CAACCTCCGCATCCTTGCTCAAAAGTACAATGAGAACAAACTAGTCTGCCGCAGGTGCTA
TGCACGCCTACCCCTTAGGGCGACCAACTGCCGCAAGAAGAAGTGTGGCCATAGCAATCA
GATAAGGGAAAAGAAGAGGTTTATGTCCAAGTTTGGAAGCGATTCTTGAACGATGGAAAT
GATGCTGAAGCAACCATCTACCGTCACATATATATTGGAGTTTAAGTTCTGTCCTAGTGT
GAAGTCATGTTAAGTTTTGCTAAATAGTCGTCTAGGTTCATAAAAATTGGAGTCTAGTTT
TGTCCTGTTGGATATACAG

Homology of Contig U35_13798 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g27930.1	141	1e-89	protein\|ubiquitin fusion protein, putative, expressed
Brachypodium v1_2	Bradi2g12325.1	282	5e-96
Arabidopsis v10	AT3G52590.1	128	1e-72	\| Symbols: UBQ1, EMB2167, ERD16, HAP4 \| ubiquitin extension protein 1 \| chr3:19505668-19506681 FORWARD LENGTH=128