barSeed - Barley Seed Development Database

Probe CUST_15715_PI390587928

Source Contig U35_25770

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_15715_PI390587928	Hv_44K_v2	CGACTCGAAGGCGGCGGCGGCGGCGCATCAGGGCAGCGAGGCGGAGGAGGCGCGCGGGCC	146	GeneList: cyan MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.384	1.123	1.047	0.825	1.006	0.879
Raw	21309.567	23706.833	21834.467	24379.700	11085.600	10945.380

Probe Sequence's BLAST hits in Barley Unigene Datasets

This probe has no hits to the blast databases

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence

Contig Sequence (212 bp)

>U35_25770 212 Hv_44K_v2
GTCGTGTCCACCGTCTTCGTGGCCGTGCTGATGGTGCTCCTCGCGGCCCCGGTCGCCGTG
CCGGCGTACGTGGGCTGGACGTCCTGGATGAAGTCCCGCAAGGCGGCCAACGCCGACGCG
GAGGACGCGGCCGCACCCCTGCTGCTCGACTCGAAGGCGGCGGCGGCGGCGCATCAGGGC
AGCGAGGCGGAGGAGGCGCGCGGGCCCGGGGA

Homology of Contig U35_25770 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None