barSeed - Barley Seed Development Database

Probe CUST_15691_PI390587928

Source Contig U35_25785

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_15691_PI390587928	Hv_44K_v2	AGGTGCTCACACCCTTTTCAGCTTTGCCCTTTCTTTCTGCTGTAAAACATTATTACCCTT	510	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_6919.4	520	2e-24	403 - 462	100	60 / 60	plus	ABC21816
Harvest21	ABC21816	623	3e-25	54 - 113	100	60 / 60	minus	ABC21816
Harvest35	U35_25785	623	3e-25	511 - 570	100	60 / 60	plus

Contig Sequence (623 bp)

>U35_25785 623 Hv_44K_v2
GCAGAATGGACAGGCATAGGCCGCGCCGGCGGGCGGCGGCGGCAACTTGGTCAGCGACCG
CCGCCGCACGTCTACCGCCAGTTCGTTCCCCTCGACCGAGGAAGTTAGGAGATTTTTAAG
GTGGAAAGGAACAGGATGATTTACGGAGATTCAGAGCCATCTGCACAATATCGATGAAGA
AGGATTTTCGGGACTACAAGCACACTAGCAGCTGAACAAAAGTGGTGAGGATGCCATCAC
TCCCCCTGCGGTGAAACTCCAATCAGATTGGATGATCATAGTTATTAAGCAAATAAATAC
CTGGACATACTCAACCATGATCTTTCATATGTCATCTGATAAGGGAACAAGCTTTGATTC
TGTTAAATCTAAGCTAGTTAGCAGAAACAAGGTGAGAACCTCGTTTATTGATGGGGGTTA
GCAAAAACAAGCCTTGAGTTGAGTTACGGTTCCATTCAATTGAAGATCTATTCAAGCCAC
CATGATTCTTTGGTGGCCAGCTGTGTCTTCAGGTGCTCACACCCTTTTCAGCTTTGCCCT
TTCTTTCTGCTGTAAAACATTATTACCCTTCCTTCATCAATGAAATCAAAAAGTAGCTTT
TTTTGTCAAAAAAAAAAAAAAAA

Homology of Contig U35_25785 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None