- Probe CUST_15689_PI390587928
- Source Contig U35_25788
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_15689_PI390587928 | Hv_44K_v2 | TTTGGCCAAACCTATGGTTGTGATTGTTCTGATGGTTTAAACTTGATCTGTTATGCAGAC | 343 | GeneList: orange MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.746 | 0.975 | 1.579 | 1.603 | 0.602 | 1.150 |
| Raw | 41.748 | 85.339 | 120.114 | 199.941 | 25.895 | 52.982 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_21917.5 | 1218 | 2e-24 | 865 - 924 | 100 | 60 / 60 | plus | ABC10354 ABC37717 |
| JLOC1 | JLOC1_15199.5 | 1502 | 8e-25 | 1129 - 1188 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_15199.4 | 1237 | 8e-25 | 864 - 923 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC25325 | 520 | 3e-25 | 344 - 403 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_25788 | 520 | 3e-25 | 344 - 403 | 100 | 60 / 60 | plus |
Contig Sequence (520 bp)
>U35_25788 520 Hv_44K_v2 CCAGCAGTAGCGCTGTAGCGTCTCAGTGATAAAAAGGGATAACAATATCAGGCATTTAGT TTATTCTTCTTCTGATGATGATTGTCAACCGTTGCATTTTCCGCCGGTTGCAATTCGTGT AGCACAAAGTAATATATATTCTGTATTATTTTAGTCCGTATGTTTGTAGATAATGGATCT GAATGTCACAATAAATGTCATTTTGGAGTTTGACATGGTCTCCCAGTTTACAGTTGACAT CAGTTTTCTTGAAATATGACTCGCCGAATAAAATAGGCACATATGAGCCAAGTGCATTTC ATTTAGCTAGAGTTATCAGTTTGGTGTTATAGATGCTTGAAAATTTGGCCAAACCTATGG TTGTGATTGTTCTGATGGTTTAAACTTGATCTGTTATGCAGACCGAGAAGTCTTTCCTCA AGCAGCAAAAGGTTTTTGCTCAGGACTGACGAGGCTTGTGTGGAGTTTCTGGATTGATGA CAAGGCTGGTGTCTCGGCCTGATTCTTTGTTGTAGAATAG
Homology of Contig U35_25788 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |