barSeed - Barley Seed Development Database

Probe CUST_15684_PI390587928

Source Contig U35_34431

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_15684_PI390587928	Hv_44K_v2	TGTCTTAAGAAGAGATGGAGAAAACAATGCCGACGTGTTGGTTGTGCTACTGAATTTTGT	363	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_31994.1	1476	7e-23	51 - 110	98	59 / 60	minus	ABC21024
MLOC	MLOC_31994.2	1210	7e-23	44 - 103	98	59 / 60	minus	ABC21024
MLOC	AK359133	1226	3e-21	1123 - 1182	97	58 / 60	plus	ABC21024
JLOC1	JLOC1_20941.2	1459	4e-23	1350 - 1409	98	59 / 60	plus
JLOC1	JLOC1_20941.1	1462	4e-23	1353 - 1412	98	59 / 60	plus
Harvest35	U35_34431	423	3e-25	364 - 423	100	60 / 60	plus

Contig Sequence (423 bp)

>U35_34431 423 Hv_44K_v2
TCGGCGTGCAGTATGTCGTCCTTGACATGGGTGCAGTTGGCAGCATTGACACTAGCAGGA
CGAGCATGCTGACCTGAACAGGAGAGCAATTCAGATCGTGTTGGAGAACCCGGGGAGCGA
GATCATGAAGAAGCTAGACAGCTCCAAGGTGCTGGAGCTCATCGTCCACGAGTGGATCTT
CCCGACGGTGGGCGAGTTCGTGGCAGAGTGCGACTTCATGCTGCACTCCCACAAACCGGG
CATGGTGGTTGACAATGCCATGCGCCGAGAACATGGTCTGATTAGGTATGACCTAAGTTG
AGTTGTCAAGCGGCAATGCAAGCCGATATCTATATTTCAAGTCCAAGCTTTCAATGCGTT
TTCTGTCTTAAGAAGAGATGGAGAAAACAATGCCGACGTGTTGGTTGTGCTACTGAATTT
TGT

Homology of Contig U35_34431 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None