- Probe CUST_15680_PI390587928
- Source Contig U35_10480
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_15680_PI390587928 | Hv_44K_v2 | GGATTGTTATGTTAATGATGTTGTTGATCGGATTGTTATGTTAATGTTTCCCATTGGCAC | 415 | GeneList: green MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.160 | 1.369 | 1.530 | 1.046 | 0.358 | 0.252 |
| Raw | 1561.787 | 2889.723 | 2831.143 | 2915.628 | 369.694 | 279.357 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_61462.1 | 5972 | 9e-22 | 1 - 58 | 98 | 58 / 59 | minus | ABC06412 ABC44011 |
| Harvest21 | ABC44011 | 496 | 3e-25 | 22 - 81 | 100 | 60 / 60 | minus | ABC44011 |
| Harvest35 | U35_10480 | 496 | 3e-25 | 416 - 475 | 100 | 60 / 60 | plus |
Contig Sequence (496 bp)
>U35_10480 496 Hv_44K_v2 GCAACCAAGCCCATCATACAGCCCGGCAAGCCCAATCACTACTTCCGGAGGACCTAGCCC AGATTACACCCCAACTTCTCCAAACTACAGCCCCACCGCAAGCTACTCCCCCACCGCACC GGGCTACTCGCCGACATCTACCGAGCCGCAAACTAGTGGCAAGGACAAGGAGACTGCTCC CTGAAGCCGCCGACTGGGAGAAAATTGCTGCTGGCCGAGGCAGAAGCACACCGCACTAGC TGCTGTTCCTGTTTCCTCGTGTGTCACCGGAACAGGCCTTGGTTTTTGCTGCGCTGCCGA TAAATTTCTGCTGAACTTGAGTTGTTATGTATGATGGATGTTGCGAGTGACTCCCCCGGC CCTGGAACTGTGTTGTTGCGAATTTGCAATTGTACTTAATAATGTGTTGTTGATCGGATT GTTATGTTAATGATGTTGTTGATCGGATTGTTATGTTAATGTTTCCCATTGGCACTTCTT AAAAAAAAAAAAAAAA
Homology of Contig U35_10480 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |