- Probe CUST_15679_PI390587928
- Source Contig U35_10481
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_15679_PI390587928 | Hv_44K_v2 | AATCACAAGGCAGCAGCGTGGTCATGCCTCGTCCCAACAAGGAAGTGGAGGCTGCATTCA | 410 | GeneList: None MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.974 | 0.813 | 0.720 | 0.588 | 1.345 | 1.198 |
| Raw | 3.289 | 3.388 | 3.088 | 4.026 | 3.539 | 3.466 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_16173.1 | 3778 | 2e-24 | 3340 - 3399 | 100 | 60 / 60 | minus | ABC12582 |
| MLOC | MLOC_16173.2 | 3816 | 2e-24 | 3323 - 3382 | 100 | 60 / 60 | minus | ABC12582 |
| MLOC | MLOC_16173.3 | 3679 | 2e-24 | 3171 - 3230 | 100 | 60 / 60 | minus | ABC12582 |
| JLOC1 | JLOC1_11121.1 | 3590 | 8e-25 | 209 - 268 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_10481 | 471 | 3e-25 | 411 - 470 | 100 | 60 / 60 | plus |
Contig Sequence (471 bp)
>U35_10481 471 Hv_44K_v2 AAGCCGGCCCAAATAACCCCCCCTCCCTCCCCAACCCCAACCCACCAAAATCAATCCCAG CTCGCGAAATCCGTCGCCGTCGCCGTCGCCGTCGCCATCGCCGTCGCCATCGCCGTCTTC GCCGGAGCCGTTTCGCCCGCGTTCGCAGGGGCAACTCGTCTTCGCGCTCCTCCTATCGGC CGTCCCGGACGCGATTGACTTTGTTTGGTGGAAGAAAATGCACTGCATTATGCCCCCAGC GCCTCCTCAGGCGGGCGCGATGAGGATGGTGACTGTCCTAGGGCAGGAGGATAGCAGTAG CGCGATGCAGGGTGGTCTGATCTTGCGGAAACAGCAGGATAGGGTCACCTACCCGCGTCG ATCAAGGAGCTCCGCTGTAGGTTTGGACGTCCTTGCGAAGAGGAAACGAGAATCACAAGG CAGCAGCGTGGTCATGCCTCGTCCCAACAAGGAAGTGGAGGCTGCATTCAC
Homology of Contig U35_10481 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |