- Probe CUST_15671_PI390587928
- Source Contig U35_10486
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_15671_PI390587928 | Hv_44K_v2 | TTGTTAAGTGATTGGTCAGCTTGTGGAAATGGATCGCGTGTTCCCGTCGTTTTCAAAAAA | 343 | GeneList: plum2 MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.181 | 0.487 | 1.544 | 2.341 | 1.165 | 1.344 |
| Raw | 648.902 | 2855.244 | 7561.163 | 16201.693 | 3326.677 | 4035.717 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| JLOC1 | JLOC1_610.1 | 424 | 5e-22 | 359 - 413 | 100 | 55 / 55 | plus | |
| Harvest21 | ABC24237 | 406 | 3e-25 | 344 - 403 | 100 | 60 / 60 | plus | ABC24237 |
| Harvest35 | U35_10486 | 406 | 3e-25 | 344 - 403 | 100 | 60 / 60 | plus |
Contig Sequence (406 bp)
>U35_10486 406 Hv_44K_v2 GCTTGCTGCTGCTGATCATGCCGCTCCTCTTACTCCCTGGCTCGCAAGGGATGACTTGCA GGGAGCTGAGCAAGACCTATACTTCTCCCAACTGCGCGGCCGAACGATGCATGGAGCACT GCCAAACGGAGGGCAACGATAACGGGGTGTGCGAGGGCAGCTACTTCGACCCCTACAAGG CATTCTGCTTCTGCAACAACCGCTGCTGAGCATCGATGGCGCATTGCTTCGGCCTTTGGG AGTGTAATAGAGATGGTTGCTAAGGCGAGCCGTCGTCGACGGCGCGATTCATGCAAGTTG TAGCTGTAACAATTTTCATCTGTATCCTCTTTTTTTTAACTGCTTGTTAAGTGATTGGTC AGCTTGTGGAAATGGATCGCGTGTTCCCGTCGTTTTCAAAAAAAAA
Homology of Contig U35_10486 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |