barSeed - Barley Seed Development Database

Probe CUST_15662_PI390587928

Source Contig U35_22460

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_15662_PI390587928	Hv_44K_v2	CAAACCACCATTTACTTGTACTGTTTTATTAGTGAAATGAAATGACAGCGTTGCTTGCTA	602	GeneList: skyblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.299	0.726	2.447	2.687	1.169	0.902
Raw	1254.829	4793.873	14265.173	23143.717	3779.147	3142.843

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_44386.1	1423	6e-24	64 - 122	100	59 / 59	minus	ABC18015
JLOC1	JLOC1_28768.1	1427	3e-24	64 - 122	100	59 / 59	minus
Harvest21	ABC18015	678	3e-25	603 - 662	100	60 / 60	plus	ABC18015
Harvest35	U35_22460	678	3e-25	603 - 662	100	60 / 60	plus

Contig Sequence (678 bp)

>U35_22460 678 Hv_44K_v2
TGGGCCCGGCCTCGCCGGACTACGCGCGATGGGGCAAGACACTCATGGCCACGCTCAGCG
ACAAGCCCGACGCCGAGTCCGACGACCAGTCGGCGCTGGCATACCTGCTGCTCAAGAACC
GCAAGAAGTGGGGCGCCAGAACGTACCTGGAGCACGACTACTACTTCCAGGGATACTGGG
CGGAGATCGTGGACAAGCTCGACGGCGTCGCGGCGAGGTACAGGGCGGCGGAGCGGCGGT
TCGGGCCGGCGCTCCGGCGAAAGCACGCGGAGGGGGAGCACGCGCTGTACGCGGCGGCGA
GGAGCGCGGCACTGAGGAAGAAGGACGGCGGCGTCCCGGGGCCCGATGGGGGCGGGCAGA
GGGCGTCCTGGCGCCGGCCGTTCGTGACGCACTTCACCGGATGCAACCCCTGCGGCGGCA
AGCCCAACGAGATCTACTCCAACGAGACCTGCGCCGACGGGATGCGGCGCGCGCTCAACC
TCGCCGACGACCAGGTGCTCCGCGCCTACGGCTTCCGCCACGCCGGACCGCTCAAGGACG
ACGTGCGCCCGCTCTAGTTTAGTCGTAGTCGAATTGAGCGTGCAGTCTGTTACAGCAAAA
ATCAAACCACCATTTACTTGTACTGTTTTATTAGTGAAATGAAATGACAGCGTTGCTTGC
TAAAAAAAAAAAAAAAAA

Homology of Contig U35_22460 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os11g34390.1	484	1e-70	protein\|glycosyltransferase, putative, expressed
Brachypodium v1_2	Bradi4g16670.1	480	1e-71
Arabidopsis v10	None