- Probe CUST_15661_PI390587928
- Source Contig U35_22461
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_15661_PI390587928 | Hv_44K_v2 | TTGCTGGTTGAATGGACAAAGGAAGAAAGCTCCAACACCAGAGGAATTAGCTGAACTGGA | 419 | GeneList: blue MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.398 | 1.268 | 1.160 | 0.873 | 0.540 | 0.606 |
| Raw | 472.892 | 658.079 | 532.155 | 609.188 | 134.410 | 169.579 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK358840 | 1920 | 2e-24 | 373 - 432 | 100 | 60 / 60 | plus | ABC29093 |
| MLOC | AK375235 | 1045 | 2e-24 | 382 - 441 | 100 | 60 / 60 | plus | ABC29093 |
| MLOC | MLOC_78179.6 | 1088 | 2e-24 | 346 - 405 | 100 | 60 / 60 | plus | ABC29093 |
| MLOC | MLOC_78179.2 | 949 | 2e-24 | 685 - 744 | 100 | 60 / 60 | plus | ABC29093 |
| MLOC | MLOC_78179.7 | 1416 | 2e-24 | 603 - 662 | 100 | 60 / 60 | plus | ABC29093 |
| MLOC | MLOC_78179.3 | 1259 | 2e-24 | 446 - 505 | 100 | 60 / 60 | plus | ABC29093 |
| MLOC | MLOC_78179.1 | 610 | 2e-24 | 451 - 510 | 100 | 60 / 60 | plus | ABC29093 |
| MLOC | MLOC_78179.8 | 1192 | 2e-24 | 450 - 509 | 100 | 60 / 60 | plus | ABC29093 |
| MLOC | MLOC_78179.5 | 526 | 2e-24 | 433 - 492 | 100 | 60 / 60 | plus | ABC29093 |
| MLOC | MLOC_78179.4 | 1260 | 2e-24 | 447 - 506 | 100 | 60 / 60 | plus | ABC29093 |
| MLOC | MLOC_25780.1 | 758 | 2e-24 | 380 - 439 | 100 | 60 / 60 | plus | ABC29093 |
| MLOC | MLOC_25780.2 | 2139 | 2e-24 | 380 - 439 | 100 | 60 / 60 | plus | ABC29093 |
| MLOC | MLOC_25780.6 | 2279 | 2e-24 | 529 - 588 | 100 | 60 / 60 | plus | ABC29093 |
| MLOC | MLOC_25780.3 | 2308 | 2e-24 | 549 - 608 | 100 | 60 / 60 | plus | ABC29093 |
| MLOC | MLOC_25780.4 | 2218 | 2e-24 | 459 - 518 | 100 | 60 / 60 | plus | ABC29093 |
| MLOC | MLOC_25780.5 | 837 | 2e-24 | 459 - 518 | 100 | 60 / 60 | plus | ABC29093 |
| JLOC1 | JLOC1_52108.5 | 857 | 8e-25 | 399 - 458 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_52108.4 | 955 | 8e-25 | 497 - 556 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_52108.3 | 1571 | 8e-25 | 475 - 534 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_52108.2 | 933 | 8e-25 | 475 - 534 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_52108.1 | 1593 | 8e-25 | 497 - 556 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_17563.3 | 783 | 8e-25 | 405 - 464 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_17563.2 | 825 | 8e-25 | 447 - 506 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_17563.1 | 2206 | 8e-25 | 447 - 506 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC29093 | 479 | 3e-25 | 368 - 427 | 100 | 60 / 60 | plus | ABC29093 |
| Harvest35 | U35_22461 | 535 | 3e-25 | 420 - 479 | 100 | 60 / 60 | plus |
Contig Sequence (535 bp)
>U35_22461 535 Hv_44K_v2 ACCCAAACCCGAGCCTGCCGTGCTCACCCGTCTTCTCCCAGCCGCCGAGCAACAGCGACT CCCCTCGGCGACCCCAACTCCGGCGGCGGCGCTGCAGGTCGAAGCGGGGGAGGCGTCGCG TCTGAGCAGCCGACGGCCAGCGGAGGAGGAGGGGGTCCATAAGGCGGCGGCGCGGTAACT GGTCCGGCGAGCGGCGAACGGACGAAGGCGGCCGGAAGAGGGTGAGGCGGCGGAGCGATG TCGAAGCGGCTGATGGAGCGGATGCTGGGGATGTTCCGGTCCCGGACGCAGGTGGGCGTC GACAGGGCCGGCAACCACTACTTCTCCCGCGTCGAGGAGGTCGACGGCGCCATGAAGGAG AAGCGGTGGGTGGAGTTCAAGGGCGACCGGGACCCGACCACTGTTCCAGTTGAGTGGATT TGCTGGTTGAATGGACAAAGGAAGAAAGCTCCAACACCAGAGGAATTAGCTGAACTGGAG GCGAGGCGTGTACGTGTGAAGCAAAATGTTGAGCTTCTTAAAAAAAAGAAGAAGA
Homology of Contig U35_22461 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |