barSeed - Barley Seed Development Database

Probe CUST_15660_PI390587928

Source Contig U35_22462

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_15660_PI390587928	Hv_44K_v2	CTTCGGTGCTAGTTTTGATACGTAGTAAAACTTTGAAAGACAAACTAATCAGCCTTCTTT	533	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK375235	1045	3e-21	982 - 1041	97	58 / 60	plus	ABC29093
MLOC	MLOC_24533.1	780	3e-21	525 - 584	97	58 / 60	plus	None
MLOC	MLOC_24533.2	904	3e-21	467 - 526	97	58 / 60	plus	None
JLOC1	JLOC1_16857.1	724	2e-21	460 - 519	97	58 / 60	plus
Harvest35	U35_22462	631	3e-25	534 - 593	100	60 / 60	plus

Contig Sequence (631 bp)

>U35_22462 631 Hv_44K_v2
CGTGTACGTGTGAAGCAAAATGTTGAGCTTCTTAAAAAGAAAGAATAATAGGAAAGAAGG
GCTGGTGTCCGACCAGTCAAGACAATCGGGAAAACGGATTCCCCAAATCTGAGAAGTTTT
ACACAGCAGTTCCCTGGTACATCTGAAAATAAAAAGAAAGAACCTGAGAAGGTGTCTAAG
CCTAATGATGCGACAGATGCAGAAGATGCCAGAACAGATAATGACAGGTCTTCCGAACCA
ACAGGAACTGGTGCCAGTTTTAAACCAGGGACTTGGCTGCCACCGTCCTGAATGCCAACC
TATAATTGCAGCAGATGAAGTGTCCCTGCTTGAGCTTCTTTTTTTTCGTGGCCTACCTGC
TGTCAGCTCGGATAGAGTGTTCCAAGATTATGCTCTCCTCCACCATTTTGATGCAAGAAA
TGGGGAGTTCTGTATTTTGTGTACCGGTGTATGCCTGTCAATTGCTGAAGTTCAGCGAGG
TCTCACCTCACTAAGCAACATGAGCATTCTCTCTTTTTGATTTTTGCCGAATCCTTCGGT
GCTAGTTTTGATACGTAGTAAAACTTTGAAAGACAAACTAATCAGCCTTCTTTCTATAAA
GTTAAGAGTTCTGTTAAAAAAAAAAAAAAAA

Homology of Contig U35_22462 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None