barSeed - Barley Seed Development Database

Probe CUST_15657_PI390587928

Source Contig U35_22465

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_15657_PI390587928	Hv_44K_v2	CCAACACGCAAATCATACAACATTTTGCTTGATGCGTTCGCAGTATCGGGATTAGTAGAA	792	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_59531.2	2163	2e-24	1360 - 1419	100	60 / 60	plus	ABC25611
MLOC	MLOC_59531.1	1976	2e-24	1161 - 1220	100	60 / 60	plus	ABC25611
JLOC1	JLOC1_38744.2	2464	8e-25	1351 - 1410	100	60 / 60	plus
JLOC1	JLOC1_38744.1	2282	8e-25	1169 - 1228	100	60 / 60	plus
Harvest21	ABC18166	855	3e-25	793 - 852	100	60 / 60	plus
Harvest35	U35_22465	855	3e-25	793 - 852	100	60 / 60	plus

Contig Sequence (855 bp)

>U35_22465 855 Hv_44K_v2
GCTGGATCGGCCGTGTCTTCCATTCTCAAGACCCAGCGGAACACGACGGGGGCGCTACCA
AGGGACACTGTTCTTGGCACTCTTGTGCGGTTCAAACAGCTCAAAAAATGGGATCTCGTC
AGCGAGATTCTTGAATGGCTTCGAACACAACATTGGTGGGACTTCAGCGAGATGGACTTT
TTAATGCTTGTCACAGCTTACGGAAAACTGGGGGATTTCAGCAAGGCGGAAAGGGTCCTC
AAGTACATGAACAAGAAAGGTTACCGGCCGACTGTGATATCTCAGACCGCTCTCATGGAG
GCATATGGAAGAGCCAAGCAGTACAGAAAGGCCGAGGCTGTGTTTCATAAGATGCAGACG
TCAGGCCCTGAACCATCACCCATCACATATCAAATCATTCTGAAATCGCTTGTTGAGGGC
GACAAATATAAGGAAGCTGAAGCTATTTTCGAGGACCTTCTCAATGAAAAAAGAGCTTCT
TTTAAACCAGACCAGAAGATGTTTCATATGATGATCTATATGTACAAGAAGGCTGGGGAC
TATACCCAAGCGCGTAAGCTATTTGCGCAGATGCCCGAGAGAGGAATCCCACAGTCTACA
GTGACTTTTAATAGTTTGATGTCATTTGAAGCAGACTATAAGGAGGTTTCAAGTATTTAT
GATCAGATGCAAAGAGCCGGACTAAAACCCGATGTTGTGAGCTATTCTCTGCTGATCAAA
GCTTACGGGAAAGCTAGGAGGGAAGATGAAGCATTGGCGGTGTTTGAAGAGATGCTTGAT
GCTGGAATCAGGCCAACACGCAAATCATACAACATTTTGCTTGATGCGTTCGCAGTATCG
GGATTAGTAGAAGAG

Homology of Contig U35_22465 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g09270.1	610	3e-177	protein\|pentatricopeptide, putative, expressed
Brachypodium v1_2	Bradi3g14950.1	607	0.0
Arabidopsis v10	AT3G59040.2	590	8e-141	Tetratricopeptide repeat (TPR)-like superfamily protein \| chr3:21821495-21823919 REVERSE LENGTH=590