barSeed - Barley Seed Development Database

Probe CUST_15656_PI390587928

Source Contig U35_22466

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_15656_PI390587928	Hv_44K_v2	GAAACTTCACTCGGTACGACAGCCGAGTTACTGAATCACTGTCTTGTTTAGCTTAATTTG	517	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_1443.7	5119	2e-24	446 - 505	100	60 / 60	plus	ABC14794 ABC18983
MLOC	MLOC_1443.8	2550	2e-24	632 - 691	100	60 / 60	plus	ABC14794 ABC18983
MLOC	MLOC_1443.4	5430	2e-24	648 - 707	100	60 / 60	plus	ABC14794 ABC18983
MLOC	MLOC_1443.2	4755	2e-24	686 - 745	100	60 / 60	plus	ABC14794 ABC18983
MLOC	MLOC_1443.9	4327	2e-24	631 - 690	100	60 / 60	plus	ABC14794 ABC18983
MLOC	MLOC_1443.10	3355	2e-24	631 - 690	100	60 / 60	plus	ABC14794 ABC18983
MLOC	MLOC_1443.6	2414	2e-24	637 - 696	100	60 / 60	plus	ABC14794 ABC18983
JLOC1	JLOC1_890.8	5428	8e-25	624 - 683	100	60 / 60	plus
JLOC1	JLOC1_890.7	2673	8e-25	624 - 683	100	60 / 60	plus
JLOC1	JLOC1_890.6	4355	8e-25	624 - 683	100	60 / 60	plus
JLOC1	JLOC1_890.5	3376	8e-25	624 - 683	100	60 / 60	plus
JLOC1	JLOC1_890.4	4350	8e-25	626 - 685	100	60 / 60	plus
JLOC1	JLOC1_890.2	4633	8e-25	630 - 689	100	60 / 60	plus
JLOC1	JLOC1_890.1	4959	8e-25	630 - 689	100	60 / 60	plus
Harvest21	ABC17198	577	3e-25	518 - 577	100	60 / 60	plus
Harvest35	U35_22466	577	3e-25	518 - 577	100	60 / 60	plus

Contig Sequence (577 bp)

>U35_22466 577 Hv_44K_v2
GCGAACTTCTCCGACGACGGCGATGGCAAACCTACGTCGACCCTTGTGCCATGCCGTTGA
TCCCCTCTCCTGCCCCGGTACCATTGACTGTACATCTACTGCATCCGGCAAACTTCTGCT
GCTACAACGCCAACAATTCTTGCCGCGTTCATCCTGCCTCCTTTTCTTCTTATTATTTTT
GTCGCGGGGATCCCCTGATGTTTAACTGGCTGGGCATTGAGACCAAGATGATCTCCTTTC
TTCGAGGATCCCTTATCTTGGAGATACATCTTTTCCGCGGGAAGATCTACCTTCGGCGGC
TCGGTCGCCGGATCGTGCTTTCGGAGGATGATTTTTACTGGCCGGGGAAGATGATTGGTG
ACTGGTGATGCCGTGATGCCCTGATGATTGGAGTGATCTCCTCGGGTGGATGCTGAAGTA
GACAGCGAGATGTGGGCTGATGAAAATTCTCTCCTATTGACAGTGACCGATCTTCACTTC
TTCTTTGTGCATTTTGTTCTTTTCTTTCACATGTCTAGAAACTTCACTCGGTACGACAGC
CGAGTTACTGAATCACTGTCTTGTTTAGCTTAATTTG

Homology of Contig U35_22466 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None