barSeed - Barley Seed Development Database

Probe CUST_15648_PI390587928

Source Contig U35_10492

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_15648_PI390587928	Hv_44K_v2	TCTTGAGGACGAGTACTTCAGTGAAGAGATTCAGAAACTCAGGGATGATGTTGTACACAA	598	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK357070	3588	2e-24	2198 - 2257	100	60 / 60	plus	ABC20675
MLOC	MLOC_54024.3	3468	2e-24	1542 - 1601	100	60 / 60	minus	ABC20675
MLOC	MLOC_54024.4	3335	2e-24	1615 - 1674	100	60 / 60	minus	ABC20675
MLOC	MLOC_54024.5	3340	2e-24	1615 - 1674	100	60 / 60	minus	ABC20675
MLOC	MLOC_54024.1	3340	2e-24	1589 - 1648	100	60 / 60	minus	ABC20675
MLOC	MLOC_54024.2	3335	2e-24	1589 - 1648	100	60 / 60	minus	ABC20675
JLOC1	JLOC1_34755.4	3213	8e-25	1567 - 1626	100	60 / 60	plus
JLOC1	JLOC1_34755.3	3218	8e-25	1572 - 1631	100	60 / 60	plus
JLOC1	JLOC1_34755.2	3099	8e-25	1453 - 1512	100	60 / 60	plus
JLOC1	JLOC1_34755.1	3138	8e-25	1492 - 1551	100	60 / 60	plus
Harvest21	ABC23914	687	3e-25	599 - 658	100	60 / 60	plus
Harvest35	U35_10492	687	3e-25	599 - 658	100	60 / 60	plus

Contig Sequence (687 bp)

>U35_10492 687 Hv_44K_v2
CCTACTTCTGGCCTTTTTGTCGGCAACCTTTGTATGCTGGAGCCATGCCAGTAGTCTTCA
ATGCTACAATTCTTAACGGGATGGGGGTGATTGGTTATGTTAAGGATCCGCCTGTATGGC
AGCCATCTGAAGATGTGGGCAATCTTCTTAGTGTTCACTTCACCTACTCGGACACCATCT
GGCCTTGGACAGGGTACCTTGCCCTGCACATGCAAGTTAAAGACGAAGGTTCTCAGTTTT
CAGGCATAATTAGTGGCAATGTTACCCTGTCGATTTACAGCCCAGCTGCTGAGGGGGAAA
GCAGCCCACGGAGTAGTACGTGTGTTCTTTACCTGAAGATCAGGGTGGTTCAAACACCTG
TTAGGTCAAGAAGAATACTGTGGGACCAATTTCATAACATCAAGTACCCATCTGGATATG
TTCCGAGGGATTCACTTAATGTGAATAATGATATCCTTGATTGGCATGGTGACCACTTGC
ACACAAATTTTCACATACTGTTCAACATGCTGAGAGATGCAGGATACTATATTGAGACCC
TTGGGTCACCACTTACCTGCTTTGATGCTAGCAATTATGGTACACTGCTCATGGTTGATC
TTGAGGACGAGTACTTCAGTGAAGAGATTCAGAAACTCAGGGATGATGTTGTACACAAGG
GGCTCGGCCTTGCTGTTTTTGCTGAAT

Homology of Contig U35_10492 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g06810.1	681	3e-158	protein\|OsSub49 - Putative Subtilisin homologue, expressed
Brachypodium v1_2	Bradi1g48447.1	1047	5e-156
Arabidopsis v10	AT5G19660.1	1038	8e-130	\| Symbols: ATSBT6.1, S1P, ATS1P \| SITE-1 protease \| chr5:6642118-6646418 REVERSE LENGTH=1038