barSeed - Barley Seed Development Database

Probe CUST_15644_PI390587928

Source Contig U35_10494

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_15644_PI390587928	Hv_44K_v2	CCAGCAACAGCCTCCCAGGGAGGGTGATGAGCTACGGCAAGAACCTGAAGCCTACGGGGT	335	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK361816	1924	2e-24	514 - 573	100	60 / 60	plus	None
MLOC	AK356988	2316	2e-24	845 - 904	100	60 / 60	plus	None
MLOC	MLOC_5125.1	1610	2e-24	114 - 173	100	60 / 60	plus	None
JLOC1	JLOC1_3274.2	1637	8e-25	56 - 115	100	60 / 60	plus
JLOC1	JLOC1_3274.1	1729	8e-25	142 - 201	100	60 / 60	plus
Harvest21	ABC23360	395	3e-25	336 - 395	100	60 / 60	plus
Harvest35	U35_10494	395	3e-25	336 - 395	100	60 / 60	plus

Contig Sequence (395 bp)

>U35_10494 395 Hv_44K_v2
CTCCTCCTCCCGCTCCCCCGCCGACGCCGCGGCGGAATGGGACGACGCGGCCACGTCCCT
CGCCGAATCCCCCCGCGCCACGCCGCCGCCCGTGGTCGTCACGGCCAACGCCGCCCAGGC
CCAGCCCCCGGCCCCGTCCGTCGTGACCGCCACCACATCCACCGCCAGCGAGCTCACCGT
CGTCGCCCTGCCCCGGGGCGGAGGCGGCGGCGCGGCCGGGAAGAAGGACCTCGCCGAGAT
CGCCACCGAGATCGACGAGTACTTCCTCAAGGCCGCCGACGCCGGCGCCCGCGTCGCCGC
GCTGCTCGAGGCCCCAATCTGCGAGCTCCCCGACGCCAGCAACAGCCTCCCAGGGAGGGT
GATGAGCTACGGCAAGAACCTGAAGCCTACGGGGT

Homology of Contig U35_10494 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None