barSeed - Barley Seed Development Database

Probe CUST_15629_PI390587928

Source Contig U35_22473

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_15629_PI390587928	Hv_44K_v2	GTTGTCCTTTTAACCCTCATAATGCTGTAAACAATTCTGGGTTTCAGACCTTATATGAAA	286	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.030	1.831	1.319	0.752	0.262	0.281
Raw	64.896	95.703	57.073	53.073	5.732	6.860

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_56904.1	5107	2e-24	55 - 114	100	60 / 60	minus	ABC17715 ABC26675
Harvest21	ABC17715	409	3e-25	287 - 346	100	60 / 60	plus	ABC17715
Harvest35	U35_22473	409	3e-25	287 - 346	100	60 / 60	plus

Contig Sequence (409 bp)

>U35_22473 409 Hv_44K_v2
GGCCTCTCCGAACGCCTTCATGCTGCTTTGCTGCTGTCACCTGTGGAAACATTGGAATGC
TGCTGTGTTCCGTGGCCTCTCTCCTTCCCTACCCGACGTCCTCAAGTATTACCGGGATGA
CACGTCGTTGTGGCATGGGAGGTGCAAGGTGGATCAGCGCTGCCACATTGGCGTCTGGCT
TCGCGTCCTCGAGGCGCCGAAGGTGGCTGCGCACCCTGCGGCTTGAGCCTCGCCGCTGTC
CTTGGTCTTTCTCACTGTTTGTATCTATGTTGGCACTCAACTTACTGTTGTCCTTTTAAC
CCTCATAATGCTGTAAACAATTCTGGGTTTCAGACCTTATATGAAAATTCACTTGTTTTT
GTTGGAAACTACTTAAAACACTTTTCATTTTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_22473 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None