- Probe CUST_1561_PI390587928
- Source Contig U35_42209
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_1561_PI390587928 | Hv_44K_v2 | CCACAAAAAGCCCAGGGTGTGATTAGGTACTCAAGTTGGTATGGTCTATGGTTCAAAAAA | 11 | GeneList: mediumpurple3 MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 6.760 | 5.410 | 1.516 | 0.611 | 0.280 | 0.418 |
| Raw | 1445.281 | 1755.348 | 423.451 | 270.552 | 42.609 | 69.916 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| Harvest21 | ABC37722 | 364 | 3e-25 | 12 - 71 | 100 | 60 / 60 | minus | ABC37722 |
| Harvest35 | U35_42209 | 364 | 3e-25 | 12 - 71 | 100 | 60 / 60 | minus |
Contig Sequence (364 bp)
>U35_42209 364 Hv_44K_v2 TTTTTTTTTTTTTTTTTGAACCATAGACCATACCAACTTGAGTACCTAATCACACCCTGG GCTTTTTGTGGGGCCTTAAACCATTGCAGCCAATAAGGCCAACATTACAAAGCCAATAGA AGCTAGTGTAACTTGGAATGGAATTCTGCCTTTGGCCTTCCTCAGGAACATTGCTTAATA AAATGGGATACTGGGGATCACCACCATCCCACAAAGAATGAACTGGGGGAAAAGTGCATC CATAGGTACATTCCATCCACCTTTCATGACTTTGCTTAACCCTCCCAGCAGGCAAACAAG GGTGAGCAACGCGAAAGCCGCGATGATCACATATTTCGGTTCCGACGACCCGAAACCCAT AATC
Homology of Contig U35_42209 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |