barSeed
Links

Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_15613_PI390587928Hv_44K_v2GATGTGCTGAAACTACATGTAGCACGGACCCAGGAACTCATTAATGCCGTTTGGATGAAA14GeneList: yellow
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 2.1201.9671.0370.8200.4230.392
Raw 1478.1672072.221989.3601236.684226.087226.175



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCMLOC_58166.117386e-24225 - 28310059 / 59minus ABC46559
MLOCMLOC_58166.217526e-24225 - 28310059 / 59minus ABC46559
MLOCMLOC_58166.313763e-221294 - 13529858 / 59plus ABC46559
JLOC1JLOC1_37762.215843e-241314 - 137210059 / 59plus
JLOC1JLOC1_37762.115983e-241328 - 138610059 / 59plus
Harvest21ABC465596013e-2515 - 7410060 / 60minusABC46559
Harvest35U35_464386013e-2515 - 7410060 / 60minus



Contig Sequence (601 bp)

>U35_46438 601 Hv_44K_v2
TTTTTTTTTTTTTTTTTCATCCAAACGGCATTAATGAGTTCCTGGGTCCGTGCTACATGT
AGTTTCAGCACATCAAGTTAGATGAAGACACGATAGTTTGAAAATCACTCAGGCAGTGCC
AAACTGCAGGTGGTTTGTAACTTCGTAAAAACACTCGTCGCGTGAGGCACTCTACACTTC
TGCTCAAGTCTAGTTGTACAGCAAAGATCGAAGATAGGAATAGAATCCTGAATCACTTGA
AGGCAGGGCTGAATGAAGGGTTCGCCATGTCACCGGCAAGGCTGCACATGGGTAGGGGGG
TGACCTTCGGAGCAAACATTGGATACTACCGAAACCCGAAAAATTAGGTCCAATTAACCA
CCAAAAGATAAATTCTTTCACCATCACATCTGCCAAGCTACTAAACTACTTTGCTGCTGA
ATTAAATGCCTTCTGGATCTCCGTTGTTACCGCCTCAGCAAGGTCTGATGCCTTATACTC
AGCTCCAAAGCATCTTACTGTCTCCAGGCATGGATCTAGCAAGTACATGTTATGAGAACT
TTCTACAATATAATCCTGACCAACTTCACCAACTTTTTTAAAGAAAATGCGGTATTCTTG
T



Homology of Contig U35_46438 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7None
Brachypodium v1_2None
Arabidopsis v10None