barSeed - Barley Seed Development Database

Probe CUST_155_PI415269222

Source Contig TA37636_4513

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_155_PI415269222	Hv_44K_v2	GGAGATACAGCATGGTTTCTTGCCCACTTACTGCAGTAACCTTGCACTTATATCCATGAT	2225	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_56714.1	2811	2e-24	1078 - 1137	100	60 / 60	plus	ABC08728 ABC14350
MLOC	MLOC_56713.2	3923	2e-24	3837 - 3896	100	60 / 60	plus	ABC08728
JLOC1	JLOC1_36708.2	5065	8e-25	3313 - 3372	100	60 / 60	plus
JLOC1	JLOC1_36708.1	5573	8e-25	3821 - 3880	100	60 / 60	plus
Harvest21	ABC08728	2307	3e-25	2226 - 2285	100	60 / 60	plus	ABC08728
Harvest35	U35_17764	2307	6e-22	2226 - 2285	97	58 / 60	plus

Contig Sequence (2285 bp)

>TA37636_4513 2285 Hv_44K_v2
ACTCTGACCACCAACCAGATGTCAGCGGTGAGGCTTGTGGCAATTGGGAGGTGGCCCGAT
ACACTTAGGAACTTTAAGGTTGATGGTACCACTTATGATCCAAGTGATGGCAAGATACAT
GACTGGCCAACTTTGAACATGGATGATAACCTCCAGATGATCGCGAAGATAGCTGCACTC
TGCAATGATGCAAGTATTGCACACTCTGAGCATCAGTATGTTGCTACTGGGATGCCCACA
GAGGCTGCATTAAAGGTTTTGGTCGAGAAAATGGGGCTCCCTGGTGGATATACTCCATCA
CTGGATTCATCTGATTTGCTAAGGTGCTGTCAATGGTGGAACAACGATGCCAAAAGAGTA
GGGACTCTGGAATTTGACCGTACTAGAAAATCAATGGGAGTTATTGTAAAAAAAGCTGAG
ACTGGAAAGAATTTGTTGCTTGTGAAGGGGGCAGTAGAAAATCTGCTAGAGAGAAGTGCC
TATATTCAGTTACTTGATGGATCCGTCGTGCTCTTGGATGAGGGTGCCAAGGCACTTGTA
TTGTCAACACTTAGGGAAATGTCTGGCAGTGCGTTGCGCTGTTTGGGCTTTGCATACAAG
GAAGATCTGGCAGATTTTGCAACATATGATGGAGAAGAACATCCCGCTCACAAATATCTA
CTTGATCCTGCATACTACTCTTCCATTGAGAGTAATCTGATATTCTGTGGTTTTGTTGGT
CTAAGGGACCCTCCACGAGAAGAAGTCCACAAAGCAATTGAAGATTGCAGGGCTGCTGGT
ATACGTGTTATGGTGATAACAGGTGATAACAAAGAAACAGCAGAGGCAATATGCCGTGAG
ATTGGGGTTTTTGGCCCCAGTGAAAATATTAGCTCCAAGAGCTTTGCAGGGAAGGAATTT
ATGGCTCTTCCTGATAAGAAGAAGCTGTTGAGGCAAACAGGTGGCCTTCTCTTCTCAAGG
GCAGAGCCAAAACATAAGCAAGAAATTGTTAGGCTGCTCAAAGAAGATGGTGAAGTCGTT
GCAATGACTGGTGATGGAGTGAATGATGCACCGGCTCTGAAGTTAGCTGATATTGGAATT
GCGATGGGTATTACGGGGACTGAGGTTGCAAAAGAAGCTTCAGATATGGTGCTTGCAGAT
GATAACTTCAGTACAATTGTCTCAGCTGTTGGTGAAGGAAGGTCTATTTACAACAACATG
AAGGCTTTTATAAGATATATGATATCTTCGAACATTGGAGAAGTTCCCTCCATATTCCTC
ACGTCGGCTTTAGGCATCCCAGAAGGCCTCATTCCTGTGCAACTTCTGTGGGTCAATCTT
GTTACGGATGGCCCTCCTGCAACAGCATTAGGATTCAATCCACCAGATAAGGATATCATG
AAGAAACCTCCTAGAAGAAGTGATGATTCATTGATCACTCCTTGGATCCTGTTCCGCTAC
ATGGTTATTGGGCTGTATGTTGGGATTGCAACAGTGGGGATCTTTATCATCTGGTACACT
CATGGCTCTTTCCTGGGAATTGATCTGGCTAGTGATGGTCACACTCTTGTTTCATACTCC
CAGCTCTCAAACTGGGGCCAGTGCCCCTCATGGGAGGGTTTCAATGTGTCATCATTCACA
GCAGGGGCAAGGACATTCAACTTTGATGAAAACCCTTGTGATTACTTCCAGGGTGGCAAA
ATAAAAGCGACAACCCTCTCCCTGTCCGTCTTGGTGTCCATTGAGATGTTCAACTCACTG
AATGCCCTGTCTGAAGATGGCAGCCTTCTGAGCATGCCTCCATGGGTGAACCCCTGGCTT
CTTCTGGCAATGTCGGTGTCTTTTGGGCTTCATTTTTTGATCCTCTACGTGCCCTTCCTT
ACCCAAATCTTCGGGATTGTGCCCCTCAGTTTCAACGAATGGCTTTTGGTGGTAGCAGTG
GCCTTCCCAGTGGTCCTCATCGATGAGGTTCTTAAGTTTGTTGGGCGGTGCTTGACAGCT
CGTGCAAGAAAACAATTAGGAAAGCGGAAGGAAGAGTAGAAGGTAGTGATTGAGTAATAG
ATTGCAGGCTTGCCACGGGGGAGTAGACGTCTGGTGATACCCCATTATTTTTCTTGAGAT
CTGAGGGCTCTGCTCTTTGTTGAGCATGAAGGAAGTTAGGGTACTCTATAGAACTCATAA
TCATGCCTCGAGTTTAACAGACTCATTTATTCATTTGTAACAAAAAATGGTGTTATGAAT
GTGCTGGAGATACAGCATGGTTTCTTGCCCACTTACTGCAGTAACCTTGCACTTATATCC
ATGAT

Homology of Contig TA37636_4513 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os03g17310.1	1063	protein\|calcium-transporting ATPase, endoplasmic reticulum-type, putative, expressed
Brachypodium v1_2	Bradi1g66150.1	1063
Arabidopsis v10	AT1G07670.1	1061	\| Symbols: ATECA4, ECA4 \| endomembrane-type CA-ATPase 4 \| chr1:2370305-2374196 REVERSE LENGTH=1061