barSeed - Barley Seed Development Database

Probe CUST_1559_PI390587928

Source Contig U35_30231

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_1559_PI390587928	Hv_44K_v2	AGAGGCCTACGGATTCCTGCTTCCTCAACAAGGGTCTCAACATCGTCGGCTGGCTGAACA	129	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_57599.8	1615	2e-24	1181 - 1240	100	60 / 60	plus	None
MLOC	MLOC_57599.7	1605	2e-24	430 - 489	100	60 / 60	minus	None
MLOC	MLOC_57599.4	2296	2e-24	505 - 564	100	60 / 60	minus	None
MLOC	MLOC_57599.6	1972	2e-24	496 - 555	100	60 / 60	minus	None
MLOC	MLOC_57599.3	2559	2e-24	505 - 564	100	60 / 60	minus	None
MLOC	MLOC_57599.1	2280	2e-24	529 - 588	100	60 / 60	minus	None
MLOC	MLOC_57599.2	2226	2e-24	518 - 577	100	60 / 60	minus	None
MLOC	MLOC_57599.5	2293	2e-24	505 - 564	100	60 / 60	minus	None
JLOC1	JLOC1_37353.1	2312	8e-25	1663 - 1722	100	60 / 60	plus
Harvest21	ABC30044	423	3e-25	130 - 189	100	60 / 60	plus
Harvest35	U35_30231	423	3e-25	130 - 189	100	60 / 60	plus

Contig Sequence (423 bp)

>U35_30231 423 Hv_44K_v2
ACTTCGTCCGCACTGTCGTGGCGGGTACCGGTGGGTACCTAGCTCCAGAGTACCTGCAAA
ATGGGCATTCGACCGAGAAATCGGACGTGTATAGCTTTGGGGTGCTTTTGCTGGAGCTGG
TGACCGGAAAGAGGCCTACGGATTCCTGCTTCCTCAACAAGGGTCTCAACATCGTCGGCT
GGCTGAACACGCTGAGCGGGGAGCACCGTCTGGAGGAGATCCTGGATGAGAGGTCGGGCG
ACGCGGAGGTGGAGGCGGTGGAGGGGATCCTGGACATCGCGGCCATGTGCACGGACGCCG
ACCCGGGGCAGCGGCCGTCGATGGGGGCGGTGCTCAAGATGCTGGAGGAGGAGATCCTGT
CGCCCTGCCTCAGCGAGCTCTACTACGAGCAGCACCTGGAACTCTGAGCTCTCTCTGATG
AGC

Homology of Contig U35_30231 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g44090.1	629	1e-77	protein\|leucine-rich repeat family protein, putative, expressed
Brachypodium v1_2	Bradi4g00550.1	613	8e-80
Arabidopsis v10	None