- Probe CUST_15595_PI390587928
- Source Contig U35_46446
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_15595_PI390587928 | Hv_44K_v2 | TTCCTCGACGAGCTCAACATCGAGTACTACTAGCATGACGACTACGTCATCATCAAGCAC | 46 | GeneList: darkgreen MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.806 | 1.330 | 4.179 | 2.273 | 0.701 | 0.589 |
| Raw | 49.685 | 116.239 | 345.100 | 283.115 | 32.201 | 30.417 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| Harvest21 | ABC46578 | 106 | 3e-25 | 47 - 106 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_46446 | 106 | 3e-25 | 47 - 106 | 100 | 60 / 60 | plus |
Contig Sequence (106 bp)
>U35_46446 106 Hv_44K_v2 CGGACTGCTCTTCTGCGCCATGGTCGTGCGCAATCCGGCGCTCCTTTTCCTCGACGAGCT CAACATCGAGTACTACTAGCATGACGACTACGTCATCATCAAGCAC
Homology of Contig U35_46446 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |