barSeed - Barley Seed Development Database

Probe CUST_15592_PI390587928

Source Contig U35_46449

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_15592_PI390587928	Hv_44K_v2	TCCACACACACACACACGCGCTCGGATAATAGAGGTTGGGAGAGAGGGATAGACGGGACA	36	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_80844.1	1332	7e-23	1239 - 1298	98	59 / 60	minus	ABC18913 ABC21171
JLOC1	JLOC1_53817.1	1221	4e-23	34 - 93	98	59 / 60	plus
Harvest21	ABC46587	332	3e-25	37 - 96	100	60 / 60	plus
Harvest21	ABC46588	548	1e-23	35 - 94	98	59 / 60	plus
Harvest35	U35_46449	332	3e-25	37 - 96	100	60 / 60	plus
Harvest35	U35_46450	548	1e-23	35 - 94	98	59 / 60	plus

Contig Sequence (332 bp)

>U35_46449 332 Hv_44K_v2
GTTCCAACTTCCAACCCGGGCGTGGAGCTGGGGGGCTCCACACACACACACACGCGCTCG
GATAATAGAGGTTGGGAGAGAGGGATAGACGGGACACGAAGGGGAGGGAGATGATGGAGA
GGGCCGACGACTTAGGGCTCAGCCTCAGTCTCAGCTCGCCTCTTGCTCCTCGCACTCACC
GTGGGGCCATGCTGCTCCACGCTCCAGAGAGGAGATTCCTGGAGATGCCGCTGCTCCCTG
CGAAGCGGGTCAGCGCGGTCTCTGCGGACGAGGAGCGCTCCGGCCAGCGTGGCGGCGGCA
GCGACGACGAGGACGGAGGCTGCGGCATGGAC

Homology of Contig U35_46449 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None