barSeed - Barley Seed Development Database

Probe CUST_15586_PI390587928

Source Contig U35_22495

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_15586_PI390587928	Hv_44K_v2	CAGAGAAACATGAGCGAATCCTTCTGATAACTGAACCGTGATAAATATATTCTTGCATTC	455	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.877	4.219	1.476	0.453	0.030	0.016
Raw	1275.786	3097.872	864.800	430.859	9.625	4.409

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC52584	479	3e-25	415 - 474	100	60 / 60	plus
Harvest35	U35_22495	520	3e-25	456 - 515	100	60 / 60	plus

Contig Sequence (520 bp)

>U35_22495 520 Hv_44K_v2
GGGGGCAAGATAGAAAGGTAATATCACCATTGGAAACAGAACTAATATAAACAGTTCCCT
CTACCGTCCATATCAAGGATGACGACTACCAAGCTGGTGCTCCTAGGCCTCGTCCTTTTG
GTGCTTTGTTCAGGTGTTATTTCAAAGGACAGAATAGACGAGGGATCATATTTCCCCCAC
AGTTGCGATATACATGTTGCCTCCAAGTCATGTCCATCCAAAGATGAATGTCTGAAACTA
TGCAAACAAACGTACCACTCCGGCAAGGTCTATGGTGAATGTGCTCGTGATGGATGCCAC
TGCATAGTCTGTGTGTTATCTGCAGGAAACTGAGGATACTACCAAACCTTGCACGGCGTA
CGCTGCATGTTGTTTTCTAAGATTTGGAATATTTTTAGTAATAATATTTACATGTGCATG
TAGAATATATCTTAAAGCATGTGATAGTTTGTGTTCAGAGAAACATGAGCGAATCCTTCT
GATAACTGAACCGTGATAAATATATTCTTGCATTCAATCT

Homology of Contig U35_22495 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None