- Probe CUST_15582_PI390587928
- Source Contig U35_22499
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_15582_PI390587928 | Hv_44K_v2 | GTGATGCTTGCTGTTTAGTATTAGTAGATGGGAAGGATTCATACTACAAGCGAAATTTTA | 739 | GeneList: turquoise MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.148 | 0.955 | 1.096 | 0.968 | 0.521 | 0.586 |
| Raw | 126.047 | 164.930 | 163.393 | 221.500 | 42.115 | 54.129 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_69126.1 | 2437 | 2e-24 | 1634 - 1693 | 100 | 60 / 60 | minus | ABC06101 ABC33492 |
| MLOC | MLOC_69126.3 | 3106 | 2e-24 | 2305 - 2364 | 100 | 60 / 60 | minus | ABC06101 ABC33492 |
| MLOC | MLOC_69126.2 | 3123 | 2e-24 | 2320 - 2379 | 100 | 60 / 60 | minus | ABC06101 ABC33492 |
| MLOC | MLOC_69126.5 | 2416 | 2e-24 | 1613 - 1672 | 100 | 60 / 60 | minus | ABC06101 ABC33492 |
| JLOC1 | JLOC1_45795.12 | 1644 | 8e-25 | 745 - 804 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_45795.11 | 2356 | 8e-25 | 745 - 804 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_45795.9 | 2427 | 8e-25 | 745 - 804 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_45795.8 | 3113 | 8e-25 | 745 - 804 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_45795.5 | 3104 | 8e-25 | 745 - 804 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_45795.3 | 2418 | 8e-25 | 745 - 804 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_45795.2 | 1582 | 8e-25 | 745 - 804 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC17051 | 806 | 3e-25 | 740 - 799 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_22499 | 807 | 3e-25 | 740 - 799 | 100 | 60 / 60 | plus |
Contig Sequence (807 bp)
>U35_22499 807 Hv_44K_v2 GACCCAACCCTCTCCTCTCCCGAGCCGCCGAGTCCAACCTCCACAGCTCTCACCCGCAAC CCGAAACCCTAGCTCGTGCACATGGCGACGAGGCTCTGGATCCACAGGCCGGAGGTGCAG CTCTGGATTTGACCCGGACGATGCCATCAACGGAGAGCGCGGCGGGGCTGCGGACGTCGG AGTTCGCGCTGCCGGACGGCGTGCTGGCGGTGCTGTCGTGGGACCCCTACGAGCAACTGG ATGTGGCGCGCCGCATCACCGCGCTGGCCGTCGCCGGCTGGGTCACCGGGCTCGAGTGCG AGGTGGCGCGGCTCAGGGAGGGCGCCGCCGACAGGGAACAGGAGAACGTCGAGCCGTGGG ACGTCGAGAGCACGGAGGTCGCTGGTCCTGGCCATGCGGGTGCTCCCGCTAGCCCTCACT GCCGCCATCTTCTCCGGCGCCACCGCCATCGTCATCTACATCTCCGGCCTCTTGGAGTCG GACCTGGCGGCGCTTGCCGCGCTGCAGGGAGGGTTCATCAAGTGCGTGGTACATCGCCCC CTTGCTGCTGATCTACTGCTGCTCCCTTCCGCACATTACAGATTTCCTGTCAGTTGGGGC TCAGCTGTGTCATCATCTGTGTGCAAATTCGATGCTACATTGTGTTGTACATGGGGATCA TGCATGAGCCTTGGTAGATTGGCATGGTAAACTGGTCGATAACTTCTATGACTTCCTCTG TGAATTGATGTGAATGAATGTGATGCTTGCTGTTTAGTATTAGTAGATGGGAAGGATTCA TACTACAAGCGAAATTTTATTTTATCT
Homology of Contig U35_22499 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |