barSeed - Barley Seed Development Database

Probe CUST_15576_PI390587928

Source Contig U35_46450

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_15576_PI390587928	Hv_44K_v2	AAACTCCACACACACGCACACGCGCTCGGATAATAGAGGTTGGGAGAGAGGGATAGACGG	30	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_80844.1	1332	2e-24	1243 - 1302	100	60 / 60	minus	ABC18913 ABC21171
JLOC1	JLOC1_53817.1	1221	8e-25	30 - 89	100	60 / 60	plus
Harvest21	ABC46588	548	3e-25	31 - 90	100	60 / 60	plus
Harvest21	ABC46587	332	6e-22	36 - 92	98	56 / 57	plus
Harvest35	U35_46450	548	3e-25	31 - 90	100	60 / 60	plus
Harvest35	U35_46449	332	6e-22	36 - 92	98	56 / 57	plus

Contig Sequence (548 bp)

>U35_46450 548 Hv_44K_v2
GTTCCAACTTCCAACCCCAACTGCAACTGCAAACTCCACACACACGCACACGCGCTCGGA
TAATAGAGGTTGGGAGAGAGGGATAGACGGGACACGAAGGGGAGGGAGATGATGGAGAGG
GCCGACGACTTAGGGCTCAGCCTCAGTCTCAGCTCGCCTCTTGCTCCTCGCACTCACCAT
GTCGCCATGCTGCTCCACGCTCCAGAGAGGAGATTCCTGGAGATGCCGCTGCTCCCTGCG
AAGCGGGTCAGCGCGGTCTCTGCGGACGAGGAGCGCTCCGGCCAGCGTGGCGGCGGCAGC
GACGACGAGGACGGAGGCTGCGGCATGGACGGCTCCCGCAAGAAGCTCCGGTTGTCCAAG
GACCAGTCCGCCGTGCTCGAGGACAGCTTCCGGGAGCACCCCACTCTGAACCCGAGGCAG
AAAGCAGCCTTAGCGCAGCAGCTGGGCCTGCGGTCGCGGCAGGTGGAGGTGTGGTTCCAG
AACAGACGCGCAAGAACGAAGCTGAAGCAGACGGAGGTGGACTGCGAGTTCCTGAAACGC
TGCTGCGA

Homology of Contig U35_46450 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g46350.1	248	8e-55	protein\|homeobox associated leucine zipper, putative, expressed
Brachypodium v1_2	Bradi5g17570.1	226	3e-60
Arabidopsis v10	None