barSeed - Barley Seed Development Database

Probe CUST_15573_PI390587928

Source Contig U35_46455

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_15573_PI390587928	Hv_44K_v2	TTTCAGAGATTTCCGAGGAGAGTGAAAAGAGAGCGATCAAGAACCGAAGATGTGCATGGA	62	GeneList: black MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.238	0.644	0.791	1.165	1.812	3.494
Raw	4.199	24.585	25.227	61.130	32.905	69.806

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK372199	891	2e-24	92 - 151	100	60 / 60	plus	ABC13932
MLOC	MLOC_24897.1	398	2e-24	172 - 231	100	60 / 60	plus	ABC13932
JLOC1	JLOC1_17083.1	451	8e-25	212 - 271	100	60 / 60	plus
Harvest21	ABC46596	547	3e-25	63 - 122	100	60 / 60	plus
Harvest21	ABC13932	665	3e-25	89 - 148	100	60 / 60	plus	ABC13932
Harvest35	U35_46455	547	3e-25	63 - 122	100	60 / 60	plus
Harvest35	U35_6374	665	3e-25	89 - 148	100	60 / 60	plus

Contig Sequence (547 bp)

>U35_46455 547 Hv_44K_v2
TTCATTAGCTTCTTCCCTCGCGAAGATCACAGGACGAGGAGAGAAAGGGAAGGGAGTGAT
ATTTTCAGAGATTTCCGAGGAGAGTGAAAAGAGAGCGATCAAGAACCGAAGATGTGCATG
GACCGATCACCGGTGCCGGCCAAGAAGATCTGGCTTGCCATCGCCTCCCGCCTCGGCCTC
CGGCCAACAGCTGGTAGGCTCCAACTTCTTCTTCGTAGCTCATAGAGCGTCTTCTTTCTT
GCGAATGGCTGCGTCTCATCTCTCTTCGTCGCCGGCGAGTTTCTTTCTGACGGATCGACC
GGTTTGGTTGCGCTGCAGGGCTGAGGAAGCTGAGGAAGGAGGTGAGGACGTGCGAGTACC
GCGACGTGCACATCATGTGGGAGATGCTGAGGGAGATGGACTACCCGGTGCCCCTCGAGG
AGAAGGATGCCGCCGCCGCCGCGGCTGTCGCGGCGGCCGCCGGCGCCAGGAAGAAGAAGG
CGGCGTGGAGCCGCTTCCTCTACTACTGCTGCGCGTTCTGAAGTCCACGTGATGTGATCA
GATCGAT

Homology of Contig U35_46455 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None