barSeed - Barley Seed Development Database

Probe CUST_15558_PI390587928

Source Contig U35_34491

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_15558_PI390587928	Hv_44K_v2	TGACGATAGCTTCTCAGAGTACAAATTAATGTCGCGTGTTTTGTATCTATATAGGCTAGT	62	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_58898.2	1952	2e-24	316 - 375	100	60 / 60	minus	None
MLOC	MLOC_58898.5	3778	2e-24	63 - 122	100	60 / 60	minus	ABC32405
MLOC	MLOC_58898.3	2191	2e-24	316 - 375	100	60 / 60	minus	None
MLOC	MLOC_58898.4	2188	2e-24	316 - 375	100	60 / 60	minus	None
MLOC	MLOC_58898.1	2028	2e-24	321 - 380	100	60 / 60	minus	None
JLOC1	JLOC1_38292.2	3626	8e-25	3234 - 3293	100	60 / 60	plus
JLOC1	JLOC1_38292.1	3623	8e-25	3231 - 3290	100	60 / 60	plus
Harvest35	U35_34491	530	3e-25	63 - 122	100	60 / 60	minus

Contig Sequence (530 bp)

>U35_34491 530 Hv_44K_v2
CCTTCCAAATGATGCTCGAGCGGCCGCTGTACAAATTACATTTATTGATCAATTCAAAAT
AAACTAGCCTATATAGATACAAAACACGCGACATTAATTTGTACTCTGAGAAGCTATCGT
CAATTGTTTCCTCTTGTTCATCCACAATCATTGTGTTTCATCTAGTAGCTAAACAGCAGT
CAACCGAGAACGTTGTGTCAGCTCTTCAAAGGCGCGCATCGCTTCACTGTCAAGTCCTCC
CGCAAACTGGTGAACCCTATATGTGAAGCGCACGCTCTGAGCAACAAGAGCAGCCTCATT
CCCTCCTCCTGTATAAGCTGTTATTTCCTTGAGGGCCCTTTTCATGTACACCTTTGCCAG
TGTTACTGATGCCACCCTCATCTTCGAAGCAACCCCTGAATCAAGCATCCATTCAGTTGG
AATTCCAAACTGTTTATAGCACGGCATCACCGAGCTCCTCAGATTCACCAGTCTCTTCAT
GCTCTTCTCCAACTTATCCAGCATGCTTGATATCTTCCTCAAAGTAGCCT

Homology of Contig U35_34491 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi4g26830.1	453	4e-65
Arabidopsis v10	None