barSeed - Barley Seed Development Database

Probe CUST_15557_PI390587928

Source Contig U35_34495

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_15557_PI390587928	Hv_44K_v2	AATCTCATACGATGTAGAAATTGCCTGGCTCTCATAGCCAGACGGAGTGAAATGGTGGTA	54	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_64503.2	2149	2e-24	650 - 709	100	60 / 60	minus	ABC19922
MLOC	MLOC_64503.3	2150	2e-24	650 - 709	100	60 / 60	minus	ABC19922
MLOC	MLOC_64503.1	2376	2e-24	959 - 1018	100	60 / 60	minus	ABC19922 ABC43886
MLOC	MLOC_64503.4	1923	2e-24	491 - 550	100	60 / 60	minus	ABC19922
JLOC1	JLOC1_42363.1	2260	8e-25	1367 - 1426	100	60 / 60	plus
Harvest35	U35_34495	553	3e-25	55 - 114	100	60 / 60	plus

Contig Sequence (553 bp)

>U35_34495 553 Hv_44K_v2
TGCTCGAGCGGCCGCTATCGGCTGCAGCGAGAGATTCAGCTACTCAAGGCCTTCAATCTC
ATACGATGTAGAAATTGCCTGGCTCTCATAGCCAGACGGAGTGAAATGGTGGTACCGTCC
AGCATTGACCCGTGTGGTGCTCATGCCATGCCGTTGTTGCACAACGGTGCGCAGGAGGTG
ATAACAGTGCACAACACGTCTGGGCTCGCGCTCAATGGCAATCCTTCTGATGCTCACAGC
TTGTTCCCAGGATATACGTGGACGGTTGCGCTGTGTGCTGCCTGCGAGTCCCACATCGGC
TGGCTGTTCAGGGCTGACAAAAGGAACCTTCTTCCGAAATCCTTCTGGGGGATCCGCATT
TCCCAAACCTCAGACGGTACACAATCGGCTCAGGACCGACGTTCCGTGTAAGGCAGCGGC
CGCTGGGCAATCAATGCGGATTCTGGAGATAAACGTAGAAGTTCGAAACAAATCCCGGGT
GGCGGCGAAGAGGATGAGGGGAATTTCCAGAATCCACAAAGGCGACAGGCTTTCCCACCT
TCGGGCAACAGGA

Homology of Contig U35_34495 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi2g49550.2	485	2e-59
Arabidopsis v10	None