barSeed - Barley Seed Development Database

Probe CUST_15553_PI390587928

Source Contig U35_46474

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_15553_PI390587928	Hv_44K_v2	CACCTACCGGCTCAACCTCAACGGCTTCCCGGGTGATGGCTGGGCTTTCTCCTATTTCGC	160	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK362499	3231	2e-24	971 - 1030	100	60 / 60	plus	None
MLOC	MLOC_54885.1	1994	2e-24	255 - 314	100	60 / 60	plus	None
MLOC	MLOC_54885.5	1672	2e-24	228 - 287	100	60 / 60	plus	None
MLOC	MLOC_54885.2	2089	2e-24	255 - 314	100	60 / 60	plus	None
MLOC	MLOC_54885.4	1811	2e-24	253 - 312	100	60 / 60	plus	None
MLOC	MLOC_54885.3	1977	2e-24	254 - 313	100	60 / 60	plus	None
JLOC1	JLOC1_35356.3	3820	8e-25	231 - 290	100	60 / 60	plus
JLOC1	JLOC1_35356.2	3913	8e-25	245 - 304	100	60 / 60	plus
JLOC1	JLOC1_35356.1	3916	8e-25	255 - 314	100	60 / 60	plus
JLOC1	JLOC1_17765.1	1199	6e-21	867 - 925	97	57 / 59	plus
Harvest21	ABC46663	220	3e-25	161 - 220	100	60 / 60	plus
Harvest35	U35_46474	220	3e-25	161 - 220	100	60 / 60	plus

Contig Sequence (220 bp)

>U35_46474 220 Hv_44K_v2
GGATGTGGCATTCAACCGTGGCCCGGCGGGCCAACTACCTGGTCGACGCGGCGCCCGGCA
CGGTCAACGTGTCCACCGACAAGCCAGTGTTCGTCGCCACGAGTGAGAGGCCGCCGGAGA
AGGTGATGCAGACCGCTGTCGTAGGCACCCTCGGCGAGCTCACCTACCGGCTCAACCTCA
ACGGCTTCCCGGGTGATGGCTGGGCTTTCTCCTATTTCGC

Homology of Contig U35_46474 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None