barSeed - Barley Seed Development Database

Probe CUST_15549_PI390587928

Source Contig U35_46484

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_15549_PI390587928	Hv_44K_v2	TTATTCTGGCTCGCTTGGCAAGCAAAGATTTATCCGTCGCTGATTTTACTTGTCCCACAG	8	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_7730.1	724	7e-23	469 - 525	100	57 / 57	minus	None
Harvest21	ABC46682	465	3e-25	9 - 68	100	60 / 60	plus
Harvest35	U35_46484	465	3e-25	9 - 68	100	60 / 60	plus

Contig Sequence (465 bp)

>U35_46484 465 Hv_44K_v2
ATCGCCTATTATTCTGGCTCGCTTGGCAAGCAAAGATTTATCCGTCGCTGATTTTACTTG
TCCCACAGGCGCTGCCATGAAGCTGCCACTGGCTCTGCTCGTGTTCTTCTCGGCGCTGCT
CTACAGCCAGATTCAGCCGCCGCCTCAAAAGGTTCCCGGCTCGCCGGGCGGGCCTCCGGT
CACGGCGACCAGGACGAAGCTCAGGGACGGCAGGCACGTTGCCTACCTGGAATCCGGCGT
CCCAAAGGAGCGGGCCAGGTTCAAGATCATATTCGTCCATGGCTTCTTCTGCTGCAGGCA
CGACGTGCTCAACGTCTCCCAGGGGCTGCTACAAGACCTTGGCATCTACCTGCTGTCCTT
TGACCGGCCGGGGTACTGCGAAAGCGACGCGCACCCGGCACGGACGGAGGAGAGCATCGC
CGTCTACATCGCCGAGCTCGCCGACAACCTGCAGCTGGGGCCCAG

Homology of Contig U35_46484 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g33590.1	364	2e-58	protein\|hydrolase, alpha/beta fold family protein, putative, expressed
Brachypodium v1_2	Bradi5g09290.1	360	2e-62
Arabidopsis v10	None