barSeed
Links

Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_15537_PI390587928Hv_44K_v2GTTTGCGTCTTCATGGAAATGTTCAATTTGAAGGAACTACACATGCATCATTCATATGAA411GeneList: plum2
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 0.0140.2601.8262.6451.3471.156
Raw 223.3008414.52048312.40096065.70020363.88018714.457



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
Harvest21ABC165075143e-25414 - 47310060 / 60plusABC16507
Harvest35U35_54015113e-25412 - 47110060 / 60plus



Contig Sequence (511 bp)

>U35_5401 511 Hv_44K_v2
GCACAAGCAAAGCAAAGCGAAGCCTAATCGTGTTCCTGTTGGTCATGGGGTTCAACAGAG
CACATTTGTTTGCTGCCTTCGCCCTCGTCCTGCTCATCTTGTCCCACAGTGCGGAGGCGA
TTCATCCCCGTCCCCGGATATGCCATTCCCCAAGCCATATTTATCAAGGCACATGCAGCA
ACCGCAAATGCGTGGAGGTGTGCCACAGCGAGCACTTCACCGGCGGCTACTGCTCACGCA
GAGGGATTGCTACAAAAGCCCACTGTGAATGTACCGTAAAATGCGGCCATCAAAGTCCTT
CACCGCCGTCGGAAGTGCCGGAGCCGCCGCCATCTGAACGGCCAGCACCAACAAAAGTCA
TGTAGGCGAAAAAAGTTTATGGAGCCATGGACCACTGACTGAAAGGATAATGTTTGCGTC
TTCATGGAAATGTTCAATTTGAAGGAACTACACATGCATCATTCATATGAAAATAATTTG
AAGTGCCGAAGCAAAAAAAAAAAAAAAAAAA



Homology of Contig U35_5401 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7None
Brachypodium v1_2None
Arabidopsis v10None