barSeed - Barley Seed Development Database

Probe CUST_15535_PI390587928

Source Contig U35_5403

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_15535_PI390587928	Hv_44K_v2	CCTCCTCGTGATGTTGTAACTGAAGTGTGTTGTTGTTGATTAAATTTGTTATAGGAATGT	1349	GeneList: darkslateblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.569	1.759	1.050	0.784	0.321	0.281
Raw	3104.543	5295.840	2778.273	3268.439	471.326	450.363

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_63900.3	3938	2e-24	3855 - 3914	100	60 / 60	plus	ABC05295 ABC16730
MLOC	MLOC_63900.1	3343	2e-24	38 - 97	100	60 / 60	minus	ABC05295 ABC16730
MLOC	MLOC_63900.2	3449	2e-24	38 - 97	100	60 / 60	minus	ABC05295 ABC16730
JLOC1	JLOC1_41905.2	3469	8e-25	3361 - 3420	100	60 / 60	plus
JLOC1	JLOC1_41905.1	3239	8e-25	3131 - 3190	100	60 / 60	plus
Harvest21	ABC16730	1422	4e-24	1349 - 1406	100	58 / 58	plus	ABC16730
Harvest35	U35_5403	1433	3e-25	1350 - 1409	100	60 / 60	plus

Contig Sequence (1433 bp)

>U35_5403 1433 Hv_44K_v2
GATCTGCATGGGCAGTTTGGGGACCTAATGCGCCTTTTCGATGAATATGGTTATCCTTCC
ACTGCTGGTGACATAACATATATTGATTATCTCTTCTTGGGAGACTATGTCGACCGAGGT
CAGCACAGCTTGGAAACAATAACATTACTTCTTGCTCTTAAAATAGAGTACCCTGAACAT
GTTCACTTGATTAGAGGAAATCATGAGGCTGCTGACATCAATGCTCTTTTCGGCTTCCGT
CTTGAATGCATTGAGAGAATGGGTGAAAGTGATGGTATATGGGCCTGGACTAGATTCAAT
CAACTATTTAATTATCTCCCTCTGGCTGCTATGATAGAAAAGAAAATAATATGTATGCAT
GGTGGCATCGGGAGGTCAATAAACAGTGTGGAGCAAATTGAAAAAATTGAAAGGCCTATC
ACAATGGATGTTGGATCTATTGTCCTCATGGATCTTTTATGGTCTGATCCTACAGAGAAC
GATAGTGTAGAGGGTTTGAGGCCAAATGCACGAGGACCTGGCTTGGTAACATTTGGGCCT
GATCGAGTGGCAGAATTCTGTAAACGAAACAAATTGCAATTGATCATAAGAGCTCATGAG
TGTGTTATGGATGGATTTGAGCGTTTCGCCCATGGGCAGTTGATCACTTTATTTTCAGCC
GACTAATTATTGTGGCACTGCAAATAATGCCGGCGCCATACTTGTGGTGGGAAGGGGACT
AGTTATTGTCCCGAAGTTAATTCATCCACTTCCACCACCTGTTAATTCTCCTGAGTCATC
CCCTGAGCGTGCCATGGATGCCACATGGATGCAGGAACTTAACATACAACGGCCACCTAC
ACCAACTAGGGGACGGCCGCATTCTGCTGGCGACAGGAACTCCCTTGCTTACATATGATA
CATGCCAACCCCCTCCATCTTCTTGACCCTGTATGTTTCTCGTCAGAAATTTCTTTGCCA
GTTGCAAGGTACATACATTATACCTCGGGACAGCCAGCCAACAGAGCATCATGGACTCCC
AATTTTTCGAGACATTGCCCAGTAGTTAAGTTGATAGTGACTCATCAGTGTTCAGTGCAG
TCAGCCCCTCATTGGGAAGCTACATACATAACAGTTCTGAAGGGAGGAATGGAATGTTGT
CAGATAATTGTCGAAAAGCAAAAGTCTGTGTATTGTTGTCGTGGTTTACCTGTAACTGTA
GTGTTGTACATGGTTGTTAGATCATTGTTCATCCAGAGCAAGAAGGCTTGTAATGTGTTC
CGTATACCGTGGTCGTTACCGTTTAGGACGCTGCTTGCACAGCGCAGCTATACAAGTTTT
ACTGAGGTAGATTGGCTGGAGGAGAACTACCTCCTCGTGATGTTGTAACTGAAGTGTGTT
GTTGTTGATTAAATTTGTTATAGGAATGTTTACAATAAATTATTTAGAAAAAA

Homology of Contig U35_5403 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g05240.1	892	5e-157	protein\|serine/threonine protein phosphatase, putative, expressed
Brachypodium v1_2	Bradi2g36370.1	890	3e-159
Arabidopsis v10	AT4G03080.1	881	9e-149	\| Symbols: BSL1 \| BRI1 suppressor 1 (BSU1)-like 1 \| chr4:1359935-1365166 REVERSE LENGTH=881