- Probe CUST_15531_PI390587928
- Source Contig U35_24585
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_15531_PI390587928 | Hv_44K_v2 | TCACCATCTCTGATGTTGCGTGTGGAAAATTTTATGGTTGTGGAATCGCCACAGTCGTTG | 654 | GeneList: turquoise MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.472 | 1.605 | 1.141 | 0.876 | 0.283 | 0.283 |
| Raw | 454.834 | 777.978 | 483.837 | 580.739 | 67.597 | 72.161 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_68262.1 | 2195 | 2e-24 | 2063 - 2122 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_68262.2 | 1567 | 2e-24 | 1435 - 1494 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_68262.3 | 1570 | 2e-24 | 1438 - 1497 | 100 | 60 / 60 | plus | None |
| JLOC1 | JLOC1_45142.4 | 1682 | 8e-25 | 1448 - 1507 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_45142.3 | 1685 | 8e-25 | 1451 - 1510 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_45142.2 | 1910 | 8e-25 | 1676 - 1735 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_45142.1 | 1907 | 8e-25 | 1673 - 1732 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC22087 | 718 | 3e-25 | 655 - 714 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_24585 | 718 | 3e-25 | 655 - 714 | 100 | 60 / 60 | plus |
Contig Sequence (718 bp)
>U35_24585 718 Hv_44K_v2 GAGTGAGGCCAGGCAGTCGATGTCCCTCTCACCGGAGAAGGACAGGTACTACTCCACCAG GGGCTCCCCATTTCCCTTTGAGGGGAATGGGTTTGATTTCAGCGGTGGAGTGGAAGAGAA GGGCACCGCTGCCCTGCCGAGGTTCTTCATCTCGTTGTCGAACAAGGAGAAAGAGGAGGA CTTCATGGCAATGAAGGGCTGCAAGCTCCCTCAGAGGCCGAAGAAGAGGCCCAAGCTGAT GCAGAAGTGCTTGCTTACGGTGTGCCCGGGAGCGTGGCTGTCAGATTTGTCGCACGAGAG GTATGAAGTTAGAGAGAAGAAGAGCTCCAAAAAGCAGAGGGCGAGAGGACTGAAGGCGCT GTGCATGGAGAGCGATTCGGAGTAGGAAGAGGAAGGAGGATGGATTCATTTTTTGACTTG TGCTCGAGGCAGAGAAGCCGTACCTAGGTAGCAACGTTGGTTCATCTTTTAACTAGGAAA TGCTCAGCAAGCAGCTAATTTAGTGCCCGTTCCCTTTTCTCCTTATTCATCACCACCTGT TGAATCTCCATGATCCTTTCGTCTAATTGTCCATTGTCCGTTCGAATCGGAACTCTGAAG AGATCGTTGTCTGGAAGCATGAACATTGAGCAAAATAGGTAGTAATATATTAGATCACCA TCTCTGATGTTGCGTGTGGAAAATTTTATGGTTGTGGAATCGCCACAGTCGTTGTGGA
Homology of Contig U35_24585 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os03g59250.1 | 211 | 4e-58 | protein|expressed protein |
| Brachypodium v1_2 | Bradi1g04710.2 | 212 | 3e-63 | |
| Arabidopsis v10 | None |