barSeed - Barley Seed Development Database

Probe CUST_15526_PI390587928

Source Contig U35_24589

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_15526_PI390587928	Hv_44K_v2	CGGTGGATCAAGCGGAATCAGCACATTTGCCATACAGATGGCAAAGCACCTCGGAATCAA	478	GeneList: purple MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.194	0.423	0.954	1.927	1.254	1.496
Raw	4.212	16.371	34.689	111.818	24.751	32.773

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK374572	1440	7e-23	511 - 570	98	59 / 60	plus	ABC11890 ABC39564 ABC48526 ABC48881
MLOC	MLOC_66620.1	995	7e-23	785 - 844	98	59 / 60	minus	ABC11890 ABC39564 ABC48526 ABC48881
JLOC1	JLOC1_43922.1	1143	4e-23	85 - 144	98	59 / 60	plus
Harvest21	ABC20329	538	3e-25	479 - 538	100	60 / 60	plus
Harvest35	U35_24589	538	3e-25	479 - 538	100	60 / 60	plus

Contig Sequence (538 bp)

>U35_24589 538 Hv_44K_v2
GAGCTGAGCGGCGAGGGAGATCGACACCGACGACGATGAGGGCGGTGGCGATCGCGAGCC
CCGGCGGGCCGGAGGTGCTGGAGGAGCGCGAGGTGGAGGACCTCCCGGCGCCGGGGGACG
GCGAGGTGCTCCTCAGGGTGGCCGCCGCCGGCGTCAACCGCACGGACACGGTCCAGCGGC
AGGGCGGGTACCCGCTGCCGCCCGGCGCCTCGCCGTACCCGGGGGTCGAGTGCTCCGGCA
CCATCCTCGCCCTCGGGGCCAACGTTCACCCGCGCTGGGTCGTCGGCGACCAGGTGTGCG
CGCTGCTCCCCGGTGGCGGGTACGCGGAGAAGGTGGTGGTGCCGGCGGCGCTGCTGCTCC
CGGTGCCGGAGGAGGTGTCGCTGACCGACGCCGCCGGCTTGCCCGAGGTGGCCTGCACCG
TCTGGTCCACCGTCTTCATGACCAGCCACCTCTCCCCCGGCGAATCCTTCCTTATCCACG
GTGGATCAAGCGGAATCAGCACATTTGCCATACAGATGGCAAAGCACCTCGGAATCAA

Homology of Contig U35_24589 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g56180.1	329	1e-79	protein\|dehydrogenase, putative, expressed
Brachypodium v1_2	Bradi3g54670.1	328	3e-85
Arabidopsis v10	AT4G21580.1	325	7e-59	oxidoreductase, zinc-binding dehydrogenase family protein \| chr4:11475822-11477514 FORWARD LENGTH=325