- Probe CUST_15525_PI390587928
- Source Contig U35_50851
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_15525_PI390587928 | Hv_44K_v2 | CAAAGAAACCAGCTTTCATTTAAAGGGAAGCTATGTCAATGGTTGGTTGGTGTCAAAAAA | 6 | GeneList: darkslateblue MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.941 | 4.179 | 1.862 | 0.871 | 0.436 | 0.679 |
| Raw | 116.943 | 407.644 | 140.661 | 89.191 | 18.109 | 31.654 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| Harvest35 | U35_50851 | 215 | 3e-25 | 7 - 66 | 100 | 60 / 60 | minus |
Contig Sequence (215 bp)
>U35_50851 215 Hv_44K_v2 TTTTTTTTTTTTGACACCAACCAACCATTGACATAGCTTCCCTTTAAATGAAAGCTGGTT TCTTTGAAAAACACACATGGCTTTACGATTCAACTCGAACTGATCTCCACTCCTTTTGAG TGGCTAACACCTATTTAAAAAAAAACAAAATGAAAATAAAACTCCACTCGAATCAGCTTG CGACTTTTCCTTCTTCTTTGCCTTGAACCTCGTGC
Homology of Contig U35_50851 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |