barSeed - Barley Seed Development Database

Probe CUST_15521_PI390587928

Source Contig U35_36562

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_15521_PI390587928	Hv_44K_v2	ACTGGCCGACGTACAAGGTGCTGGACATCCTGCAGAAGGTGTTCTACCGCTCCAACGCGG	487	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_73052.1	2070	2e-24	527 - 586	100	60 / 60	minus	ABC03183
JLOC1	JLOC1_48618.1	2026	8e-25	1304 - 1363	100	60 / 60	plus
Harvest21	ABC31667	599	3e-25	488 - 547	100	60 / 60	plus
Harvest21	ABC03183	1993	3e-25	1294 - 1353	100	60 / 60	plus	ABC03183
Harvest21	ABC03184	784	1e-23	560 - 619	98	59 / 60	minus
Harvest35	U35_36562	599	3e-25	488 - 547	100	60 / 60	plus
Harvest35	U35_15242	1960	3e-25	1261 - 1320	100	60 / 60	plus

Contig Sequence (599 bp)

>U35_36562 599 Hv_44K_v2
GAGAAGGCCGGCGCCGAGGTCCTCAATGGTCTCTTCCTAAGGTACGAGGAGCCCAAGGAG
CGCAACGGCACGTACACGGTGCACTACAACCACTACGACAGCTCCAACGGCAAGGTGGGC
GGCGAGAAGCGGTCGTTCGAGGTGGACGCGATCGTGGGCGCGGACGGCGCCAACTCGCGC
GTGGCCAAGGATATGGGCGCGGGCGACTACGAGTACGCCATCGCGTTCCAGGAGCGCGTT
AAGATCCCCGACGACAAGATGCGCTACTACGAGGAGCGCGCCGAGATGTACGTCGGCGAC
GACGTCTCCCCCGACTTCTACGGCTGGGTGTTCCCCAAGTGCGACCACGTCGCCGTCGGC
ACCGGCACCGTCACCCACAAGGCCGACATCAAGAAGTTCCAGGCGATCGTGGCCGGGTCG
GCGAACGGGACGCGGCTGGTGGACGAGAGCGACCTGCGCAAGTACCTGGCGGAGTTCGAC
CGGCTCTACTGGCCGACGTACAAGGTGCTGGACATCCTGCAGAAGGTGTTCTACCGCTCC
AACGCGGCGCGGGAGGCGTTCGTGGAGATGTGCGCCGACGACTACGTGCAGCGGATGAC

Homology of Contig U35_36562 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g51080.1	464	9e-86	protein\|FAD binding domain containing protein, expressed
Brachypodium v1_2	Bradi3g59430.1	465	4e-90
Arabidopsis v10	AT1G74470.1	467	3e-64	Pyridine nucleotide-disulphide oxidoreductase family protein \| chr1:27991248-27992845 FORWARD LENGTH=467