barSeed - Barley Seed Development Database

Probe CUST_15516_PI390587928

Source Contig U35_36565

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_15516_PI390587928	Hv_44K_v2	TGAGGCTTCTTGACAAGAACTCTGGGGAAATGTTACAAGAGTATAAGGGCCATATATGCA	632	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_5537.1	1249	2e-24	725 - 784	100	60 / 60	plus	None
MLOC	MLOC_5537.3	1209	2e-24	435 - 494	100	60 / 60	minus	None
MLOC	MLOC_5537.2	1161	2e-24	352 - 411	100	60 / 60	minus	None
JLOC1	JLOC1_3568.2	1463	8e-25	716 - 775	100	60 / 60	plus
JLOC1	JLOC1_3568.1	1552	8e-25	710 - 769	100	60 / 60	plus
Harvest21	ABC31673	695	3e-25	633 - 692	100	60 / 60	plus
Harvest35	U35_36565	695	3e-25	633 - 692	100	60 / 60	plus

Contig Sequence (695 bp)

>U35_36565 695 Hv_44K_v2
GGAGATGTCGTCGGCGGCGCAGCAGCTGCCGCGGACGGAATCGCGGACGCTGTCGGGGCA
CGAGGGCGCGGTGCTCGCCGTTCGCTTCAACCACGACGGCAAATACTGCCTGAGCTGCGG
CAAGGACCGCACCCTCCGCCTCTGGAACCCCCACACCGGCGCCCACGTCAAGACCTATAA
ATCCCACGGTCGCGAGGTTCGCGATGTGAACGCGTCCTCGGACAACGCGAAGCTGGTGTC
GTGCGGCGGGGACAAGCAGATATTCTACTGGGATGTCGCCTCCGGCAAAGTCATCCGCAA
GTTCCGCGGCCACAACAGCGAGGTCAATTCAGTGAAGTTTAATGAGCACAACACGGTTGT
ACTGTCCGCTGGTTATGACCGTAGTGTGCGTGCATTTGACTGCAGGTCACAGAGCAGTGA
TCCAATTCAGACAATTGATACTTTTCAAGACAGTGTAATGTCAGTTAATGTAACCAACAC
CGAAATAATTGCTGGCAGTGTTGATGGTACCGTCCGAACATTTGACATTCGCATGGGTAG
GGAGACTGTTGATAACCTGGGTCATCCTGTCAACTGTATATCTTTGTCGAATGACCGCAA
TTGCATCTTGGCTAACTGTTTGGATTCTACCGTGAGGCTTCTTGACAAGAACTCTGGGGA
AATGTTACAAGAGTATAAGGGCCATATATGCAAGT

Homology of Contig U35_36565 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g33860.1	302	6e-151	protein\|WD domain, G-beta repeat domain containing protein, expressed
Brachypodium v1_2	Bradi3g45337.1	305	5e-156
Arabidopsis v10	AT5G64730.1	299	1e-118	Transducin/WD40 repeat-like superfamily protein \| chr5:25873146-25875021 FORWARD LENGTH=299