barSeed - Barley Seed Development Database

Probe CUST_15514_PI390587928

Source Contig U35_36566

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_15514_PI390587928	Hv_44K_v2	GTTCTTGACTGTTTTGCAATGTTTGTGACTTTGTGTGTTATCTCAGATGTTCTGTGCTAA	15	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.544	1.448	1.185	0.848	0.329	0.377
Raw	7405.187	10749.340	7820.890	8740.730	1198.067	1497.939

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK359461	755	2e-23	640 - 697	100	58 / 58	plus	ABC02448 ABC02449 ABC02450 ABC02452
JLOC1	JLOC1_16042.1	906	1e-23	568 - 625	100	58 / 58	plus
Harvest35	U35_36566	562	3e-25	16 - 75	100	60 / 60	minus

Contig Sequence (562 bp)

>U35_36566 562 Hv_44K_v2
TTTTTTTTTTTTTTTTTAGCACAGAACATCTGAGATAACACACAAAGTCACAAACATTGC
AAAACAGTCAAGAACTCATGAGATTACGCTTTAGTGCTGATATAGAAATACTAAAATGGT
CCGCACATTTGACAAACAAGTCTAGCCAAAACTTCCACAGGTTCTCCGAATACATGAACA
GTTTCAGTCACCAACATAGATTCGATTCACCATAAAATGACATTTCTCAGCTCATGACAA
TCGCAAGAAACAAGCATTACTGGCCCTAGCTCGAATTAACCTTAGATGCTGCTCGGGTAC
ATGAACACCCTGACCTTGCGCCCCATGGACTCGGCGGGGAGGTTGGACTTGAACTGGGCG
CGGACGACGCCGGAGTTGCCGTGCGGGCGGGTGATCTTGCCCCAGAGGCAGCGGTAGTGG
GTGCCGTTGCTCTTGGTCTTGGCCTTGTACACGTACGCCAGGCGCTTGCCGCCGTACCAC
GCCACGTCCTCCTTGGTGTTCACCCCCTCGATCTGCACCAGCGACGTGTTCTCGTACTGG
TTCGACTTGGACCTCTTGAAGC

Homology of Contig U35_36566 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g54470.1	113	5e-55	protein\|60S ribosomal protein L35a-3, putative, expressed
Brachypodium v1_2	Bradi4g16690.3	113	8e-59
Arabidopsis v10	AT1G74270.1	112	3e-51	Ribosomal protein L35Ae family protein \| chr1:27928415-27929466 REVERSE LENGTH=112