barSeed - Barley Seed Development Database

Probe CUST_15511_PI390587928

Source Contig U35_48541

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_15511_PI390587928	Hv_44K_v2	CCAATGCCAATTTCAGTTCCACATGATCGCTATCACCGCATACCAACAGCTAGATGGAAA	389	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_54689.5	6169	2e-24	5978 - 6037	100	60 / 60	minus	ABC33223
MLOC	MLOC_54689.6	6444	2e-24	5875 - 5934	100	60 / 60	minus	ABC33223
MLOC	MLOC_54689.7	6029	2e-24	5877 - 5936	100	60 / 60	minus	ABC33223
MLOC	MLOC_54689.3	6122	2e-24	5889 - 5948	100	60 / 60	minus	ABC33223
JLOC1	JLOC1_35212.2	6120	8e-25	5553 - 5612	100	60 / 60	minus
JLOC1	JLOC1_35212.1	6279	8e-25	5712 - 5771	100	60 / 60	minus
Harvest21	ABC50415	473	3e-25	390 - 449	100	60 / 60	plus
Harvest35	U35_48541	473	3e-25	390 - 449	100	60 / 60	plus

Contig Sequence (473 bp)

>U35_48541 473 Hv_44K_v2
ACTAAATGCCTGACTTCTCACTTTCACTTCCGCCGCACGAGCAAAGCACCAAGCGGCATG
GAAATGAGCAAGTATTTTAACATGGCTGACAAAATATCAAGGATAACAACAGCCACTCTA
ACGAAGAGTGGAAGAGGCACTTCTATCTGGTAAACGGAAGAACAGAAAGAATGAAAGAGG
ACACACCGAATTACCGAAAGGAACCTGGCTTTGAGACCCATATTACCTGCTGCTAACAGC
ATCCTAGTTATATAACTCTCCCCCTAAATAAACCACCTAAAGAATGGAAAACGGTCAGCG
GTGACCCATCCTTTAGTATGTACAATGTCAACTTCGCACAGACGGTATAACTAGTCTAAC
TTTCTGATGATTAAAAGTATGTCCAGTAACCAATGCCAATTTCAGTTCCACATGATCGCT
ATCACCGCATACCAACAGCTAGATGGAAAAAAAAAATCCATTGATATACCCCA

Homology of Contig U35_48541 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None