barSeed - Barley Seed Development Database

Probe CUST_15510_PI390587928

Source Contig U35_48542

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_15510_PI390587928	Hv_44K_v2	TGTGAGTTTTGGTCGGAATTTGTATTGGTAAAATAGAGAATCCTGATGGCGTGAAATGAA	-1	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.792	1.607	1.131	0.797	0.290	0.384
Raw	1230.630	1718.420	1061.284	1160.734	150.913	218.321

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction
JLOC1	JLOC1_29303.1	1015	4e-23	901 - 961	98	60 / 61	plus
Harvest21	ABC50418	470	1e-23	4 - 64	98	60 / 61	minus
Harvest35	U35_48542	470	1e-23	4 - 64	98	60 / 61	minus

Contig Sequence (470 bp)

>U35_48542 470 Hv_44K_v2
TAGTTCATTTCACGCCATCAGGATTCTCTATTTTACCAATACAANATTCCGACCAAAACT
CACAGAGCAACCACAATTTGAACCGCCAAGACCTTGATTCATCAATGCATTTCAGGTGGT
CGCAGTACATTGTTCGGAGGGCTGTATAAAGTTTGGGATTGCTGAATAAAACGTAGGTAG
AGGCAAATAAACTCAGACCATTTTAAACAAAACACAAACTCCAATCCTTCAGTATGGCGA
GCTAGCATGCGAACCCAGAGGTAATGCTGGCAGCGAGAGCGGTGAACAGTCTCACATGTA
CAGCCCCTCCGGTACACCTTCCTTCTTCTTGAACATTACCTTCTCTTTGGCCTTCTTGAA
GTCAGCATGTGTCACCTTCATCCTGCGCTCTCTTAAGGCAAGCAATCCAGCTTCAGTACA
AATAGCTTTGATATCAGCACCAGAAAACTCATTTTTGGTCATCACAAACT

Homology of Contig U35_48542 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None