barSeed - Barley Seed Development Database

Probe CUST_15501_PI390587928

Source Contig U35_24594

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_15501_PI390587928	Hv_44K_v2	GTATGGTTTGGCAGTCAATATTACGGGCCAATATTCCTATAAATTATGGTTTCCTTGCCT	258	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_58146.1	1214	7e-23	155 - 211	100	57 / 57	minus	None
JLOC1	JLOC1_37748.1	1325	4e-23	994 - 1050	100	57 / 57	plus
Harvest21	ABC19404	321	3e-25	259 - 318	100	60 / 60	plus
Harvest35	U35_24594	321	3e-25	259 - 318	100	60 / 60	plus

Contig Sequence (321 bp)

>U35_24594 321 Hv_44K_v2
ACTAGTGCCATGTTGGCTATCAAAGACCACAAGTATAGAAAAGCTTCTTCAGATATTCAT
TAAATCTTTGACTGATGTTGCGGAACATAGGCGCCTGACCCTCATGATGTACCTTTTGAG
GACCCCAGGAGAAAATAGTTTGAGTACCGTGATCATGTATCTATTGCTCACGTTGATTGA
GCGGGGTTCACACTCTCTTTCGAAACACCAGAAGAGTCATTGTGTCCTATCCTTGAGTGC
CATGTCACAAGAGTGGGAGTATGGTTTGGCAGTCAATATTACGGGCCAATATTCCTATAA
ATTATGGTTTCCTTGCCTCTG

Homology of Contig U35_24594 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None