barSeed - Barley Seed Development Database

Probe CUST_15497_PI390587928

Source Contig U35_24598

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_15497_PI390587928	Hv_44K_v2	ATAGTTGTGCAGCTCATCTTGCATGAGATTAAGTGCCTGCTGAACACCATTTCTGATGCC	898	GeneList: ivory MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.377	1.082	2.071	1.284	0.882	0.788
Raw	25.326	30.533	50.860	46.439	11.495	11.752

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_51985.3	4974	2e-24	2600 - 2659	100	60 / 60	plus	ABC13136
MLOC	MLOC_51985.5	5200	2e-24	2558 - 2617	100	60 / 60	plus	ABC13136
MLOC	MLOC_51985.4	5181	2e-24	2532 - 2591	100	60 / 60	plus	ABC13136
MLOC	MLOC_51985.2	5022	2e-24	2661 - 2720	100	60 / 60	plus	ABC13136
MLOC	MLOC_51985.1	5522	2e-24	2877 - 2936	100	60 / 60	plus	ABC13136
JLOC1	JLOC1_33251.4	5186	8e-25	2537 - 2596	100	60 / 60	plus
JLOC1	JLOC1_33251.3	5260	8e-25	2611 - 2670	100	60 / 60	plus
JLOC1	JLOC1_33251.2	5380	8e-25	2731 - 2790	100	60 / 60	plus
JLOC1	JLOC1_33251.1	5092	8e-25	2731 - 2790	100	60 / 60	plus
Harvest35	U35_24598	976	3e-25	899 - 958	100	60 / 60	plus

Contig Sequence (976 bp)

>U35_24598 976 Hv_44K_v2
GGATGGCGTGAAAGCGCTGTATGTTGAGAATCTGATGCAGCTGGAGAGGACGTTGGAGAA
AAATGCTCATTTGGAGAGATCTTTGTCAGCTGCTACTACCGAAGTTGCAGGATTGAGACA
GAATAAGGCCACATTGGAAGAATCTTGCAAGCAGCTTAGCTCCAAGATTAATGGCCACCT
GTCTGACCGTGCCATGTTCATTGCACGGATTGAGGGTATTTCTCATACCATGGAGAAGCT
ATCAGAGAAGAACGTGTTTTTGGAAAATTTGTTATCTGAAAACAATACTGAGCTTGAAAA
CCATAGAAGGAAGCTTAAAGACTTGGAAGAGTCTGCGCAGGCACTCCGCAATCAGAATTC
TTTACTTCGATCTGACAAGAGAACTCTTGTTCATGAGGTAGATAGCATGAATGGCTCTCT
ACTTGATTTGGAAACCCAGTATGCAGAGTTAGAAGGAAGGCATTTGGATCTCCAGCAGGA
GAAAAACAAGGTTCATGATGAAGCAGTCAAACTACAGCAACTGTTGAGGCTAGAGAGAGA
GAAGAGCAAAGAACTCACCCACTCAGACAAGGCTCAGTTCAGTGCTTTGCAGAAGCAGAT
AGCCCTACTTCTAGAAGATGGACGCAATAAGGAGAACCAGCTTCAAGAGGAGGAGCACAA
GATTGTCGAAGCTCAGATCGAGATTTTCATCTTGCAGAAGTGTTTAGGTGACATGGCAGA
AGCAAATTCTGATGTCTCAGGGCAACTGCAGAAGCAGCAAGAGGCACACAAAGGTCTTGA
GGAGAAACTGGCCTATTTGTCACAAAACAACCAGAAGCTTACTGAAGGGATTGGTTCTGT
GATGGAAGTGCTGCAGTTTGATGAGAAATATGGATCCTTGGATCTGATGAAGGTTGACAT
AGTTGTGCAGCTCATCTTGCATGAGATTAAGTGCCTGCTGAACACCATTTCTGATGCCCA
GGATGTCAAGCAGAAC

Homology of Contig U35_24598 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g41200.1	1592	2e-142	protein\|KIP1, putative, expressed
Brachypodium v1_2	Bradi4g02420.1	1546	6e-160
Arabidopsis v10	None