barSeed - Barley Seed Development Database

Probe CUST_15477_PI390587928

Source Contig U35_48551

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_15477_PI390587928	Hv_44K_v2	AGCAAACAGGCAGTGTGATGTACACGACGAAAAAGGGTGAACACTTGAGCATGCTAGATT	3	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.242	2.013	1.170	0.824	0.304	0.391
Raw	1038.543	1459.384	753.052	832.231	109.321	151.416

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC50435	603	3e-25	4 - 63	100	60 / 60	minus
Harvest35	U35_48551	603	3e-25	4 - 63	100	60 / 60	minus

Contig Sequence (603 bp)

>U35_48551 603 Hv_44K_v2
CCTAATCTAGCATGCTCAAGTGTTCACCCTTTTTCGTCGTGTACATCACACTGCCTGTTT
GCTAAAAATGGCTCAAGCAAATTATATCGCAGGATTCACGGCACAGTTTCGCTCTGAGGT
TTGAGTATCAATAGTAGTATATCATGGTGCGACAATGGCGGCACCAAACACATCCTCCTC
GTTTGTCCTAGGATAAACGTCACCGATGGGACTGACCCAAATCACTCTTACTATGTTTCT
TCGCCTCACTGGCGCTTTTTAGCTTTCGAACGAGACGCGTCCTTCCTCATCGTCCAAAAT
GCCGCGCGGTACCGATTCTGCATCATCGATGCCATATTTGCTGTGTACGTGGTATCTATC
ATCTTCTCCACCTCCATCACAAACCCATAATGGTAAGCTACCCTTTTCACATCTTCCAAA
CTTAGTTCGATAGACATGTCATCATCTGGTCCATAGGCATCAGCAAAGTGGTACAGAAGC
GGACCCATGTTTACCCAGACTCCACCATCCTTGAGAATTTTTGATATTATTTCAATGTAT
TCAACAATATTGTGTGCCGTATCGATGAAGAAGCAAGTTACAACAGCATCCCATGCAGAT
TCT

Homology of Contig U35_48551 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g43560.1	495	2e-65	protein\|AGAP007115-PA, putative, expressed
Brachypodium v1_2	Bradi2g20190.1	494	4e-67
Arabidopsis v10	AT2G32170.2	571	9e-51	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein \| chr2:13666476-13670924 FORWARD LENGTH=571