- Probe CUST_15475_PI390587928
- Source Contig U35_48555
Probe Details
Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
---|---|---|---|---|
CUST_15475_PI390587928 | Hv_44K_v2 | CAAGCACAATCGTTCTGTATAACATGGTAAGCTTCTGAAGATTGCTTCTATTAATTTCTG | 8 | GeneList: darkturquoise MasterList: None |
Probe Values
3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
---|---|---|---|---|---|---|
Normalized | 0.420 | 0.800 | 1.309 | 1.450 | 0.891 | 1.233 |
Raw | 60.451 | 178.550 | 258.841 | 448.775 | 97.270 | 147.227 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
---|---|---|---|---|---|---|---|---|
MLOC | MLOC_12558.4 | 2047 | 6e-24 | 1358 - 1416 | 100 | 59 / 59 | plus | None |
MLOC | MLOC_12559.2 | 2376 | 6e-24 | 673 - 731 | 100 | 59 / 59 | plus | None |
MLOC | MLOC_12558.2 | 2127 | 6e-24 | 1031 - 1089 | 100 | 59 / 59 | plus | None |
JLOC1 | JLOC1_8431.1 | 1207 | 3e-24 | 1023 - 1081 | 100 | 59 / 59 | plus | |
Harvest21 | ABC50442 | 337 | 3e-25 | 9 - 68 | 100 | 60 / 60 | minus | |
Harvest35 | U35_48555 | 337 | 3e-25 | 9 - 68 | 100 | 60 / 60 | minus |
Contig Sequence (337 bp)
>U35_48555 337 Hv_44K_v2 TTAAAATTCAGAAATTAATAGAAGCAATCTTCAGAAGCTTACCATGTTATACAGAACGAT TGTGCTTGTGGAGTAACGTGCACCTAGAAACGCTAACATCAAAAAAAACATGTGGAGTGG TTATTGCTTGTTGCACTCCTATATGACTTAATTGTAATCTAATAACAAAGATTACAGAGA AGAGAATATTGGAACACCAGGTACGGTGACGCCTGAATCTACGATGAAGATGTTGCCAGT TATATATGATGCCTTTTCATGGATCATAAAACGAACCAGCGATGTCAATGCTGGATCAGT AGTGCCATTTGTCTTAAGTGGCACAATCTTCGAAACG
Homology of Contig U35_48555 to Model Species (E-value threshold 1e-50)
Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
---|---|---|---|---|
Rice v7 | None | |||
Brachypodium v1_2 | None | |||
Arabidopsis v10 | None |