barSeed - Barley Seed Development Database

Probe CUST_15467_PI390587928

Source Contig U35_50874

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_15467_PI390587928	Hv_44K_v2	CTTCTTGGTTTGTTAGGGTTGTCTGTGACATGAAGTGGATATACTAGAACAGATTTAGAA	12	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.412	1.538	1.129	0.927	0.465	0.476
Raw	394.869	691.461	434.220	554.604	98.839	109.640

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_68525.2	3881	7e-23	3648 - 3708	98	60 / 61	plus	ABC08091
JLOC1	JLOC1_45346.1	2972	4e-23	2859 - 2919	98	60 / 61	plus
Harvest35	U35_50874	652	3e-25	13 - 72	100	60 / 60	minus

Contig Sequence (652 bp)

>U35_50874 652 Hv_44K_v2
TTTTTTTTTTTTTTCTAAATCTGTTCTAGTATATCCACTTCATGTCACAGACAACCCTAA
CAAACCAAGAAGCAACACCATGACATGCAAGAATATAGATCTGGGGGGCTTGCATTCTCC
AGGAATAGCAGTGTATACAAGAAACTCATCATCAGACGTTACCTGAGCAACTGCTTCTCT
TCGGATCAATCCCCTCCAGCATCCTTCACATTCACAGTGAACTCGTATTCCTGATCACAG
CCCAAATAGGAATCTGACATCAAGAAAACCATGTAATCCTTCTTCCCTGCTTCTGCAGGA
GCGATGAACTCGAGCATCAGGCAGGCCCTCTGCTGCAGTGCAACCCACTTGATTGCCAGC
AACTGGTCGCTGGAGCTATCACCAATCACGAGCCACCATCCTTCCTGCCTGGGCTTAGGA
TACCTCGGGGCATGAACTGGCCCAACCTCAGATGGCAAGTTTATCATGTCACGCTCTAAA
GTAACCTGCAAACTTACCTTGCCACCGGGCCTTACATAATCACCTTCACGGACTTCATAT
GCAATCTCGATGTTCGGGAACCGTTTGATGAATCCGATGATGTCCTTGAACTGAGAGTTT
GTTAACTGCAGCAGATTCTGCATCTTGTCTGCACTCATGTCAGCCCTCGTGC

Homology of Contig U35_50874 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g01740.1	2178	1e-69	protein\|U5 small nuclear ribonucleoprotein 200 kDa helicase, putative, expressed
Brachypodium v1_2	Bradi1g44500.1	646	3e-68
Arabidopsis v10	None