barSeed
Links

Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_15466_PI390587928Hv_44K_v2ACCTTACATTATGTGCTAATCATTCTTGGGCAGGAATCAAAGATCTATGGTTCCCACTTC405GeneList: brown
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 1.4551.7911.0070.8300.7090.748
Raw 15.45628.32714.88519.7014.1505.252



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
Harvest35U35_508758223e-25406 - 46510060 / 60minus



Contig Sequence (822 bp)

>U35_50875 822 Hv_44K_v2
TTTTTTTTTTTTTTTTTGCCCTGAGTAATATTTTTCTGACTCATTAACAAAAAAAAACTG
ATGACATTTTACAAATTTATATGCTGATAACAGTGCAGTGGTTCCAAGGAAACAAACAAG
TGCACCAGGGAATCACCAGCTTTTGACATGAATAGGCTGCTGATACTGTTTTAGCACATC
CCAAGCTTTACTGGTTTTCTTCACTTCCAAAAAAACATAAAAAACCACCTGTAATGGCCT
CAGGAAAATAAAGTAAAATACTGACCTAAATCTAAACCATACTACGGTATTGAATGAATT
TTCTGCTGCTGTATGACCAACACCAGCAAGAAAAGCTAGTTACTCCTCGTCCGAATCACC
GAATGTGATCTTTGTTGATTTAGGAGCATCGGCTGTGATTTCCTTGAAGTGGGAACCATA
GATCTTTGATTCCTGCCCAAGAATGATTAGCACATAATGTAAGGTTATTCATGACAGACC
GCATCTCCAATTTAAAACACTGCAGCAAATCTTAAAACAGACAAGGCTCAACAATACAGC
CTCCTTGGAAGTAATTTATCATGAATGCTTACAATATGACCTTATGAATGCACTTTTGAT
CATCCGGCGACATGTTCCAATGTCAAGATAGACTTTCACAGTTATCCCAGGTGTTTAATA
CTTTACAATCACAATTTCAAATTTTAATGATAGAAAATTTAAAAAGATGAGAAACTACTT
GAAACGCATTCAGACATAAAGTTCAGCCCAAATAAGCTATGGTTAACTGCAGCTGTCCAT
ACCATGTGTGTTACTCGTATGCTTAAAATATAACTTCTAAAA



Homology of Contig U35_50875 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7None
Brachypodium v1_2None
Arabidopsis v10None